RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	NSMCE4A	Q9NXX6	385 aa		4.62	□□□□□ -1.67
PTCD3-212	ENST00000477520	GABBR1	Q9UBS5	961 aa		4.62	□□□□□ -1.67
PTCD3-212	ENST00000477520	SLC9A2	Q9UBY0	812 aa		4.62	□□□□□ -1.67
PTCD3-212	ENST00000477520	MARCO	Q9UEW3	520 aa	Predicted RBP	4.62	□□□□□ -1.67
PTCD3-212	ENST00000477520	WASF3	Q9UPY6	502 aa		4.62	□□□□□ -1.67
PTCD3-212	ENST00000477520	ERVW-1	Q9UQF0	538 aa		4.62	□□□□□ -1.67
PTCD3-212	ENST00000477520	MTF2	Q9Y483	593 aa	Predicted RBP	4.62	□□□□□ -1.67
PTCD3-212	ENST00000477520	AFG3L2	Q9Y4W6	797 aa		4.62	□□□□□ -1.67
PTCD3-212	ENST00000477520	PCDHGA7	Q9Y5G6	932 aa		4.62	□□□□□ -1.67
PTCD3-212	ENST00000477520	LYVE1	Q9Y5Y7	322 aa		4.62	□□□□□ -1.67
PTCD3-212	ENST00000477520	CACNG2	Q9Y698	323 aa		4.62	□□□□□ -1.67
PTCD3-212	ENST00000477520	BAZ2B	Q9UIF8	2168 aa	Known RBP	4.62	□□□□□ -1.67
PTCD3-212	ENST00000477520	GREB1L	Q9C091	1923 aa	Predicted RBP	4.62	□□□□□ -1.67
PTCD3-212	ENST00000477520	TRBV23OR9-2	A0A075B6M9	112 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520		A0A1B0GTW7	788 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	PQLC2L	A1A4F0	135 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	KRT87P	A6NCN2	255 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	CCDC154	A6NI56	674 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	METTL15	A6NJ78	407 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	ZNF98	A6NK75	572 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	C22orf46	C9J442	243 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	APOC4-APOC2	K7ER74	178 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	ABCD4	O14678	606 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	SLC30A4	O14863	429 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	ZBTB14	O43829	449 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	GMDS	O60547	372 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	SOAT2	O75908	522 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	OR2B3	O76000	313 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	APOL3	O95236	402 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	PIGN	O95427	931 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	SGPL1	O95470	568 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	VNN1	O95497	513 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	SNAP29	O95721	258 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	LSM8	O95777	96 aa	Known RBP	4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	GSR	P00390	522 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	F9	P00740	461 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	FOS	P01100	380 aa	Predicted RBP	4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	APOC2	P02655	101 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	C1QA	P02745	245 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	ITGB1	P05556	798 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	EPHX1	P07099	455 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	SNRPB2	P08579	225 aa	Known RBP	4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	THRB	P10828	461 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	ZNF3	P17036	446 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	TPSB2	P20231	275 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	BTF3	P20290	206 aa	Known RBP	4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	CHRM3	P20309	590 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	CPN2	P22792	545 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	MMP8	P22894	467 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	HTR1B	P28222	390 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	AXL	P30530	894 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	HMGCL	P35914	325 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	HSD17B2	P37059	387 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	GRIA3	P42263	894 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	CDKN2B	P42772	138 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	NOV	P48745	357 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	NPY2R	P49146	381 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	CASP4	P49662	377 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	CPT1A	P50416	773 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	ERF	P50548	548 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	TPMT	P51580	245 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	DGKQ	P52824	942 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	GBX2	P52951	348 aa	Predicted RBP	4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	HMGCS2	P54868	508 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	MLLT10	P55197	1068 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	C1QTNF8	P60827	252 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	NKX3-2	P78367	333 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	SCN1B	Q07699	218 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	SREBF2	Q12772	1141 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	GRIK2	Q13002	908 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	DAG1	Q14118	895 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	KCNJ11	Q14654	390 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	PCLAF	Q15004	111 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	POLD3	Q15054	466 aa	Predicted RBP	4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	LLGL1	Q15334	1064 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	TPSAB1	Q15661	275 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	GEN1	Q17RS7	908 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	AAK1	Q2M2I8	961 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	MTERF2	Q49AM1	385 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	CBWD6	Q4V339	395 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	HSD17B12	Q53GQ0	312 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	CBWD3	Q5JTY5	395 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	CLLU1	Q5K131	121 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	CBWD5	Q5RIA9	395 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	N4BP2L1	Q5TBK1	243 aa	Predicted RBP	4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	PXDC1	Q5TGL8	231 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	STEAP4	Q687X5	459 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	HMBOX1	Q6NT76	420 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	RETSAT	Q6NUM9	610 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	BRAT1	Q6PJG6	821 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	ZYG11A	Q6WRX3	759 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	GDPD3	Q7L5L3	318 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	ZNF720	Q7Z2F6	126 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	GPAT4	Q86UL3	456 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	FAM160B2	Q86V87	743 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	KRT73	Q86Y46	540 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	PTRH1	Q86Y79	214 aa	Known RBP	4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	BBS7	Q8IWZ6	715 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	TAGAP	Q8N103	731 aa		4.61	□□□□□ -1.67
PTCD3-212	ENST00000477520	LIX1	Q8N485	282 aa		4.61	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms