RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 OR2B3O76000 313 aa13.58□□□□□ -0.24
UPF3A-204ENST00000475218 C1orf105O95561 183 aa13.58□□□□□ -0.24
UPF3A-204ENST00000475218 KRT14P02533 472 aa13.58□□□□□ -0.24
UPF3A-204ENST00000475218 ITGAXP20702 1163 aa13.58□□□□□ -0.24
UPF3A-204ENST00000475218 EIF3BP55884 814 aaKnown RBP13.58□□□□□ -0.24
UPF3A-204ENST00000475218 NCF4Q15080 339 aa13.58□□□□□ -0.24
UPF3A-204ENST00000475218 C1orf189Q5VU69 101 aa13.58□□□□□ -0.24
UPF3A-204ENST00000475218 FCRL6Q6DN72 434 aa13.58□□□□□ -0.24
UPF3A-204ENST00000475218 KIAA0930Q6ICG6 404 aaPredicted RBP13.58□□□□□ -0.24
UPF3A-204ENST00000475218 RHBDD2Q6NTF9 364 aa13.58□□□□□ -0.24
UPF3A-204ENST00000475218 TAX1BP1Q86VP1 789 aa13.58□□□□□ -0.24
UPF3A-204ENST00000475218 ZBTB2Q8N680 514 aa13.58□□□□□ -0.24
UPF3A-204ENST00000475218 OR2L8Q8NGY9 312 aa13.58□□□□□ -0.24
UPF3A-204ENST00000475218 GRPEL1Q9HAV7 217 aa13.58□□□□□ -0.24
UPF3A-204ENST00000475218 SLC22A11Q9NSA0 550 aa13.58□□□□□ -0.24
UPF3A-204ENST00000475218 GNPTGQ9UJJ9 305 aa13.58□□□□□ -0.24
UPF3A-204ENST00000475218 ANAPC2Q9UJX6 822 aa13.58□□□□□ -0.24
UPF3A-204ENST00000475218 JRKLQ9Y4A0 524 aa13.58□□□□□ -0.24
UPF3A-204ENST00000475218 ARGFXA6NJG6 315 aa13.57□□□□□ -0.24
UPF3A-204ENST00000475218 MKRN2OSH3BPM6 223 aa13.57□□□□□ -0.24
UPF3A-204ENST00000475218 AP3B1O00203 1094 aa13.57□□□□□ -0.24
UPF3A-204ENST00000475218 RASGRF2O14827 1237 aa13.57□□□□□ -0.24
UPF3A-204ENST00000475218 NRP2O60462 931 aa13.57□□□□□ -0.24
UPF3A-204ENST00000475218 NDUFS3O75489 264 aa13.57□□□□□ -0.24
UPF3A-204ENST00000475218 FMO4P31512 558 aa13.57□□□□□ -0.24
UPF3A-204ENST00000475218 PPARGP37231 505 aaPredicted RBP13.57□□□□□ -0.24
UPF3A-204ENST00000475218 COILP38432 576 aaPredicted RBP13.57□□□□□ -0.24
UPF3A-204ENST00000475218 MAGEA3P43357 314 aa13.57□□□□□ -0.24
UPF3A-204ENST00000475218 BDKRB1P46663 353 aa13.57□□□□□ -0.24
UPF3A-204ENST00000475218 YBX1P67809 324 aaKnown RBP13.57□□□□□ -0.24
UPF3A-204ENST00000475218 IGFBP7Q16270 282 aa13.57□□□□□ -0.24
UPF3A-204ENST00000475218 LRRC6Q86X45 466 aa13.57□□□□□ -0.24
UPF3A-204ENST00000475218 ZNF655Q8N720 491 aaPredicted RBP13.57□□□□□ -0.24
UPF3A-204ENST00000475218 MAGOHBQ96A72 148 aaKnown RBP13.57□□□□□ -0.24
UPF3A-204ENST00000475218 FAM136AQ96C01 138 aa13.57□□□□□ -0.24
UPF3A-204ENST00000475218 SLC30A3Q99726 388 aa13.57□□□□□ -0.24
UPF3A-204ENST00000475218 TSSK1BQ9BXA7 367 aa13.57□□□□□ -0.24
UPF3A-204ENST00000475218 KCNF1Q9H3M0 494 aa13.57□□□□□ -0.24
UPF3A-204ENST00000475218 DHCR7Q9UBM7 475 aaKnown RBP13.57□□□□□ -0.24
UPF3A-204ENST00000475218 SNX7Q9UNH6 387 aa13.57□□□□□ -0.24
UPF3A-204ENST00000475218 MED16Q9Y2X0 877 aa13.57□□□□□ -0.24
UPF3A-204ENST00000475218 ZCWPW2A0A1B0GU75 182 aa13.56□□□□□ -0.24
UPF3A-204ENST00000475218 A0A1W2PPV9 198 aa13.56□□□□□ -0.24
UPF3A-204ENST00000475218 F8W8V4 182 aa13.56□□□□□ -0.24
UPF3A-204ENST00000475218 ZSCAN9O15535 394 aaPredicted RBP13.56□□□□□ -0.24
UPF3A-204ENST00000475218 CEACAM4O75871 244 aa13.56□□□□□ -0.24
UPF3A-204ENST00000475218 PSMB5P28074 263 aa13.56□□□□□ -0.24
UPF3A-204ENST00000475218 ADARP55265 1226 aaKnown RBP13.56□□□□□ -0.24
UPF3A-204ENST00000475218 FOXK1P85037 733 aa13.56□□□□□ -0.24
UPF3A-204ENST00000475218 ASB18Q6ZVZ8 466 aa13.56□□□□□ -0.24
UPF3A-204ENST00000475218 CILP2Q8IUL8 1156 aa13.56□□□□□ -0.24
UPF3A-204ENST00000475218 SEC14L1Q92503 715 aa13.56□□□□□ -0.24
UPF3A-204ENST00000475218 SERPINB12Q96P63 405 aa13.56□□□□□ -0.24
UPF3A-204ENST00000475218 ING2Q9H160 280 aa13.56□□□□□ -0.24
UPF3A-204ENST00000475218 EURLQ9NYK6 297 aa13.56□□□□□ -0.24
UPF3A-204ENST00000475218 CRYL1Q9Y2S2 319 aa13.56□□□□□ -0.24
UPF3A-204ENST00000475218 MATN4O95460 622 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 TMED2Q15363 201 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 ANKRD20A4Q4UJ75 823 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 PAPD7Q5XG87 772 aaKnown RBP13.55□□□□□ -0.24
UPF3A-204ENST00000475218 ZNF549Q6P9A3 640 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 OTOAQ7RTW8 1153 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 HOOK3Q86VS8 718 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 GPR135Q8IZ08 494 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 SLC35F6Q8N357 371 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 GIMAP7Q8NHV1 300 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 PBKQ96KB5 322 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 ZNF285Q96NJ3 590 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 PANX3Q96QZ0 392 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 TCF12Q99081 682 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 DPH2Q9BQC3 489 aaPredicted RBP13.55□□□□□ -0.24
UPF3A-204ENST00000475218 ENAMQ9NRM1 1142 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 TSR3Q9UJK0 312 aaKnown RBP13.55□□□□□ -0.24
UPF3A-204ENST00000475218 PLCL2Q9UPR0 1127 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 AP1M2Q9Y6Q5 423 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 UTP20O75691 2785 aaKnown RBP13.55□□□□□ -0.24
UPF3A-204ENST00000475218 CYSRT1A8MQ03 144 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 GOLGA8MH3BSY2 632 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 ZNF185O15231 689 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 MAP3K7O43318 606 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 CTSVO60911 334 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 S1PR4O95977 384 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 OGNP20774 298 aaKnown RBP13.55□□□□□ -0.24
UPF3A-204ENST00000475218 GRIA3P42263 894 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 KLRB1Q12918 225 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 ATP1A4Q13733 1029 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 FASTKQ14296 549 aaKnown RBP13.55□□□□□ -0.24
UPF3A-204ENST00000475218 SLC9A5Q14940 896 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 ACSBG2Q5FVE4 666 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.55□□□□□ -0.24
UPF3A-204ENST00000475218 MRNIPQ6NTE8 343 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 NEPROQ6NW34 567 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 CNSTQ6PJW8 725 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 CCDC137Q6PK04 289 aaKnown RBP13.55□□□□□ -0.24
UPF3A-204ENST00000475218 MCATQ8IVS2 390 aaKnown RBP13.55□□□□□ -0.24
UPF3A-204ENST00000475218 DTWD1Q8N5C7 304 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 NAT8LQ8N9F0 302 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 MCUQ8NE86 351 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 OR2A1Q8NGT9 310 aa13.55□□□□□ -0.24
UPF3A-204ENST00000475218 HMGCLL1Q8TB92 370 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms