RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 H7C0S8 307 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 PLK4O00444 970 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 TO15178 435 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 APOA4P06727 396 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 LIPFP07098 398 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 VPREB1P12018 145 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 CAPN2P17655 700 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 MATR3P43243 847 aaKnown RBP eCLIP2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 CCR10P46092 362 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 CDH13P55290 713 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 COX10Q12887 443 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 ALCAMQ13740 583 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 IL11RAQ14626 422 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 RRS1Q15050 365 aaKnown RBP2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 SNAPC1Q16533 368 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 CRY2Q49AN0 593 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 CBWD6Q4V339 395 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 CBWD3Q5JTY5 395 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 TMEM211Q6ICI0 200 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 TEX38Q6PEX7 206 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 OR10S1Q8NGN2 331 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 ERLEC1Q96DZ1 483 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 SLC47A1Q96FL8 570 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 NSL1Q96IY1 281 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 CNDP2Q96KP4 475 aaKnown RBP2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 AP1M1Q9BXS5 423 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 SEMA6AQ9H2E6 1030 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 GOLPH3LQ9H4A5 285 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 RABEP2Q9H5N1 569 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 OLAHQ9NV23 265 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 COQ3Q9NZJ6 369 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 BCCIPQ9P287 314 aaKnown RBP eCLIP2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 ZHX1Q9UKY1 873 aaPredicted RBP2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 YIPF1Q9Y548 306 aa2.75□□□□□ -1.97
CCDC88A-212ENST00000474059 GIMAP1-GIMAP5A0A087WTJ2 511 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 TEX13DA0A0J9YY54 714 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 A0A1W2PPR1 153 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 TRBC2A0A5B9 178 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 MEX3AA1L020 520 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 TSPY2A6NKD2 308 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 HEPACAM2A8MVW5 462 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 A8MXE2 369 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 EPM2AB3EWF7 344 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 SPRY1O43609 319 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 GPR137BO60478 399 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 PRAMEF11O60813 436 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 TRMUO75648 421 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 AP2A2O94973 939 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 RAF1P04049 648 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 TSPY3P0CV98 308 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 TSPY8P0CW00 308 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 MYBL1P10243 752 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 GJA1P17302 382 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 CPT2P23786 658 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 DNASE1P24855 282 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 EEF1DP29692 281 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 CEACAM8P31997 349 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 CCR3P51677 355 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 RPS18P62269 152 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 SNRPEP62304 92 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 TSPY1Q01534 308 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 GAGE2BQ13066 116 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 MELKQ14680 651 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 P2RY6Q15077 328 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 TAF13Q15543 124 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 LETM2Q2VYF4 491 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 GAGE2EQ4V326 116 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 TCP11X2Q5H9J9 407 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 C1orf141Q5JVX7 400 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 ARMC3Q5W041 872 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 FAM109BQ6ICB4 259 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 GAGE2AQ6NT46 116 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 FIGLAQ6QHK4 219 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 CAMKMTQ7Z624 323 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 ZNF595Q8IYB9 648 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 TC2NQ8N9U0 490 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 TSPAN14Q8NG11 270 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 CFAP61Q8NHU2 1237 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 TEKT4Q8WW24 435 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 SECISBP2LQ93073 1101 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 GIMAP5Q96F15 307 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 MAGED4Q96JG8 741 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 LINC00615Q96LM1 132 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 ZNF830Q96NB3 372 aaPredicted RBP2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 NEK1Q96PY6 1258 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 OR6C1Q96RD1 312 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 OLFM1Q99784 485 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 SYT15Q9BQS2 421 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 PIGQQ9BRB3 760 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 C16orf70Q9BSU1 422 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 GPR88Q9GZN0 384 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 ANKRD2Q9GZV1 360 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 ZCCHC17Q9NP64 241 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 MBNL1Q9NR56 388 aaKnown RBP2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 GAGE2DQ9UEU5 116 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 CCL27Q9Y4X3 112 aa2.74□□□□□ -1.97
CCDC88A-212ENST00000474059 IPO8O15397 1037 aaKnown RBP2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 XRCC3O43542 346 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 SSX4O60224 188 aa2.73□□□□□ -1.97
CCDC88A-212ENST00000474059 TADA2AO75478 443 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms