RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 CRYBG3Q68DQ2 2970 aa18.08■□□□□ 0.49
CCDC88B-206ENST00000473405 RPN2P04844 631 aa18.08■□□□□ 0.48
CCDC88B-206ENST00000473405 CD9P21926 228 aa18.08■□□□□ 0.48
CCDC88B-206ENST00000473405 FOXL2P58012 376 aa18.08■□□□□ 0.48
CCDC88B-206ENST00000473405 BASP1P80723 227 aaKnown RBP18.08■□□□□ 0.48
CCDC88B-206ENST00000473405 TAX1BP1Q86VP1 789 aa18.08■□□□□ 0.48
CCDC88B-206ENST00000473405 TMEM151BQ8IW70 566 aa18.08■□□□□ 0.48
CCDC88B-206ENST00000473405 C2orf73Q8N5S3 287 aaPredicted RBP18.08■□□□□ 0.48
CCDC88B-206ENST00000473405 OR2L8Q8NGY9 312 aa18.08■□□□□ 0.48
CCDC88B-206ENST00000473405 CFAP61Q8NHU2 1237 aa18.08■□□□□ 0.48
CCDC88B-206ENST00000473405 C17orf62Q9BQA9 187 aa18.08■□□□□ 0.48
CCDC88B-206ENST00000473405 ANKMY1Q9P2S6 941 aa18.08■□□□□ 0.48
CCDC88B-206ENST00000473405 ANAPC5Q9UJX4 755 aa18.08■□□□□ 0.48
CCDC88B-206ENST00000473405 SRPK3Q9UPE1 567 aa18.08■□□□□ 0.48
CCDC88B-206ENST00000473405 PLCL2Q9UPR0 1127 aa18.08■□□□□ 0.48
CCDC88B-206ENST00000473405 HIVEP3Q5T1R4 2406 aa18.08■□□□□ 0.48
CCDC88B-206ENST00000473405 KRT87PA6NCN2 255 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 ZNF185O15231 689 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 ITGAXP20702 1163 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 RPS3P23396 243 aaKnown RBP eCLIP18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 OTX2P32243 289 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 UQCRFS1P47985 274 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 KCNJ1P48048 391 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 DCDP81605 110 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 SLC9A5Q14940 896 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 TMED2Q15363 201 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 MLIPQ5VWP3 458 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 PTRHD1Q6GMV3 140 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 MRPL14Q6P1L8 145 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 TLDC1Q6P9B6 456 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 C4orf22Q6V702 233 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 RAB43Q86YS6 212 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 MPP5Q8N3R9 675 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 KIFC1Q9BW19 673 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 SLC22A11Q9NSA0 550 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 SYBUQ9NX95 663 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 EURLQ9NYK6 297 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 GNPTGQ9UJJ9 305 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 RUVBL2Q9Y230 463 aaKnown RBP18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 ZNF451Q9Y4E5 1061 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 PCDHGB7Q9Y5F8 929 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 NFS1Q9Y697 457 aa18.07■□□□□ 0.48
CCDC88B-206ENST00000473405 A6NL46 340 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 TTLL8A6PVC2 850 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 RASGRF2O14827 1237 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 S1PR4O95977 384 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 CCDC175P0C221 793 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 MGAT1P26572 445 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 NPY2RP49146 381 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 RRADP55042 308 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 CCSMST1Q4G0I0 132 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 NKAIN1Q4KMZ8 207 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 CTSL3PQ5NE16 218 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 FCRL6Q6DN72 434 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 GSTA5Q7RTV2 222 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 ATCAYQ86WG3 371 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 Q8NA96 180 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 OR2Y1Q8NGV0 311 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 COL26A1Q96A83 441 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 MFSD3Q96ES6 412 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 BIRC8Q96P09 236 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 MRM3Q9HC36 420 aaKnown RBP18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 GPR83Q9NYM4 423 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 BFARQ9NZS9 450 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 IFT80Q9P2H3 777 aaPredicted RBP18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 PTRH2Q9Y3E5 179 aaKnown RBP18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 DOPEY1Q5JWR5 2465 aa18.06■□□□□ 0.48
CCDC88B-206ENST00000473405 CELSR2Q9HCU4 2923 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 TCRBV7S3A2A0A539 114 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 PRICKLE3O43900 615 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 VAPBO95292 243 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 UMODP07911 640 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 ATXN8OSP0DMR3 200 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 TPSB2P20231 275 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 CXCR5P32302 372 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 FOLR3P41439 243 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 BDKRB1P46663 353 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 EIF3BP55884 814 aaKnown RBP18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 RAPSNQ13702 412 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 SSPNQ14714 243 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 TPSAB1Q15661 275 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 JMJD6Q6NYC1 403 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 LRRC8BQ6P9F7 803 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 CES3Q6UWW8 571 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 PPP1R32Q7Z5V6 425 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 LRRC6Q86X45 466 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 FAM26EQ8N5C1 309 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 PRELID2Q8N945 189 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 CPT1CQ8TCG5 803 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 LPGAT1Q92604 370 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 SLC22A18Q96BI1 424 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 PANX3Q96QZ0 392 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 SMAD5Q99717 465 aaKnown RBP18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 NDC1Q9BTX1 674 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 ENAMQ9NRM1 1142 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 TXLNGQ9NUQ3 528 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 IRAK4Q9NWZ3 460 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 NDOR1Q9UHB4 597 aa18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 GPN3Q9UHW5 284 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-206ENST00000473405 DOCK10Q96BY6 2186 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms