RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 TTC27Q6P3X3 843 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 CASC4Q6P4E1 433 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 UNC5DQ6UXZ4 953 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 OTOAQ7RTW8 1153 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 APLFQ8IW19 511 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 LINC01555Q8NAE3 123 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 MAGOHBQ96A72 148 aaKnown RBP15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 NLNQ9BYT8 704 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 SPRTNQ9H040 489 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 TCFL5Q9UL49 500 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 SLC39A10Q9ULF5 831 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 RUVBL2Q9Y230 463 aaKnown RBP15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 KLHL20Q9Y2M5 609 aa15.15■□□□□ 0.02
CCDC88B-205ENST00000472524 DOPEY2Q9Y3R5 2298 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 C9J4A7 227 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 CAPN1P07384 714 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 MAGP20916 626 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 AGXTP21549 392 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 RPS3P23396 243 aaKnown RBP eCLIP15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 FMO4P31512 558 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 PTGIRP43119 386 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 GABRA4P48169 554 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 SARNPP82979 210 aaKnown RBP15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 GRB7Q14451 532 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 NCF4Q15080 339 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 CTSL3PQ5NE16 218 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 MRNIPQ6NTE8 343 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 SDCCAG8Q86SQ7 713 aaPredicted RBP15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 LRRC6Q86X45 466 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 RASGEF1CQ8N431 466 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 ZNF655Q8N720 491 aaPredicted RBP15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 FAM136AQ96C01 138 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 PBKQ96KB5 322 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 PSMG3-AS1Q96PY0 264 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 MENTQ9BUN1 341 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 ACSS2Q9NR19 701 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 IL1RAPL1Q9NZN1 696 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 JRKLQ9Y4A0 524 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 NFS1Q9Y697 457 aa15.14■□□□□ 0.01
CCDC88B-205ENST00000472524 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 BLACEA4D250 179 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 RASGRF2O14827 1237 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 KPNA5O15131 536 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 ZSCAN9O15535 394 aaPredicted RBP15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 NIPSNAP2O75323 286 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 TMEM63AO94886 807 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 CBSLP0DN79 551 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 CD9P21926 228 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 CBSP35520 551 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 CCL11P51671 97 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 MLIPQ5VWP3 458 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 ZNF385CQ66K41 422 aaPredicted RBP15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 KIAA0930Q6ICG6 404 aaPredicted RBP15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 TTC23LQ6PF05 361 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 CNSTQ6PJW8 725 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 ATCAYQ86WG3 371 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 DNAJC22Q8N4W6 341 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 OR2L8Q8NGY9 312 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 ADAMTS17Q8TE56 1095 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 LPGAT1Q92604 370 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 PCSK5Q92824 1860 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 DPH2Q9BQC3 489 aaPredicted RBP15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 TRIM56Q9BRZ2 755 aaKnown RBP15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 CHRNA10Q9GZZ6 450 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 TXLNGQ9NUQ3 528 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 SAMD15Q9P1V8 674 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 DHCR7Q9UBM7 475 aaKnown RBP15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 PLCL2Q9UPR0 1127 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 CRYL1Q9Y2S2 319 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 AP1M2Q9Y6Q5 423 aa15.13■□□□□ 0.01
CCDC88B-205ENST00000472524 DOCK10Q96BY6 2186 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 KRT87PA6NCN2 255 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 H3BMH7 237 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 GOLGA8MH3BSY2 632 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 PFDN6O15212 129 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 C1orf105O95561 183 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 S1PR4O95977 384 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 PAMP19021 973 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 COILP38432 576 aaPredicted RBP15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 MAGEA6P43360 314 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 UQCRFS1P47985 274 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 SLC9A5Q14940 896 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 TYSND1Q2T9J0 566 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 CCSMST1Q4G0I0 132 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 RNF187Q5TA31 235 aaPredicted RBP15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 RHBDD2Q6NTF9 364 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 CCDC137Q6PK04 289 aaKnown RBP15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 CAND1Q86VP6 1230 aaKnown RBP15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 SLC35F6Q8N357 371 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 SLC22A18Q96BI1 424 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 ZNF669Q96BR6 464 aaPredicted RBP15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 FOPNLQ96NB1 174 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 BIRC8Q96P09 236 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 SLC25A23Q9BV35 468 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 ING2Q9H160 280 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 EURLQ9NYK6 297 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 GPN3Q9UHW5 284 aaPredicted RBP15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 PADI2Q9Y2J8 665 aa15.12■□□□□ 0.01
CCDC88B-205ENST00000472524 PGRMC1O00264 195 aaKnown RBP15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms