RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	BFSP1	Q12934	665 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	ODF4	Q2M2E3	257 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	FAM174B	Q3ZCQ3	159 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	MCMDC2	Q4G0Z9	681 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	DCAF10	Q5QP82	559 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	SLC35E4	Q6ICL7	350 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	PPP1R21	Q6ZMI0	780 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	C11orf57	Q6ZUT1	292 aa	Predicted RBP	3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	MARK2	Q7KZI7	788 aa	Known RBP	3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	OCC1	Q8TAD7	63 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	PHLDA1	Q8WV24	401 aa	Predicted RBP	3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	FCAMR	Q8WWV6	532 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	INPP4A	Q96PE3	977 aa	Predicted RBP	3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	GBP5	Q96PP8	586 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	UHRF2	Q96PU4	802 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	MIS12	Q9H081	205 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044		Q9H8V8	135 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	TRPV4	Q9HBA0	871 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	DNAJC4	Q9NNZ3	241 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	A4GALT	Q9NPC4	353 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	FGF21	Q9NSA1	209 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	ADPRHL2	Q9NX46	363 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	FLRT3	Q9NZU0	649 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	POLL	Q9UGP5	575 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	DAPK2	Q9UIK4	370 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	SNX7	Q9UNH6	387 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	PROCR	Q9UNN8	238 aa		3.51	□□□□□ -1.85
PTCD3-209	ENST00000472044	NOTCH4	Q99466	2003 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	ARID2	Q68CP9	1835 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	LOC101059948	A0A1B0GTJ6	334 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	IKBKB	O14920	756 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	ATP6V0E1	O15342	81 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	LMX1B	O60663	402 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	ACSL3	O95573	720 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	PLA2G4B	P0C869	781 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	IRF2	P14316	349 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	HOXB6	P17509	224 aa	Known RBP	3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	ADRA2C	P18825	462 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	CA6	P23280	308 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	SP100	P23497	879 aa	Predicted RBP	3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	MAZ	P56270	477 aa	Known RBP	3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	PHEX	P78562	749 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	PPARD	Q03181	441 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	ZNF415	Q09FC8	603 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	TAF13	Q15543	124 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	NPTX1	Q15818	432 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	UGCG	Q16739	394 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	PHLDA2	Q53GA4	152 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	PET117	Q6UWS5	81 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	TRMT1L	Q7Z2T5	733 aa	Known RBP	3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	SPATA19	Q7Z5L4	167 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	TRPT1	Q86TN4	253 aa	Known RBP	3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	DCUN1D3	Q8IWE4	304 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	TIGD4	Q8IY51	512 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	TRIM58	Q8NG06	486 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	TM9SF4	Q92544	642 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	LMLN	Q96KR4	655 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	ZNF354B	Q96LW1	612 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	PSD2	Q9BQI7	771 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	FERMT1	Q9BQL6	677 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	RHNO1	Q9BSD3	238 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	S1PR5	Q9H228	398 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	FN3K	Q9H479	309 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	ZWILCH	Q9H900	591 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	CHCHD3	Q9NX63	227 aa	Known RBP	3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	GTF3C4	Q9UKN8	822 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	ICAM5	Q9UMF0	924 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	WDR83OS	Q9Y284	106 aa		3.5	□□□□□ -1.85
PTCD3-209	ENST00000472044	TRAV24	A0A0B4J272	114 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	HTR3E	A5X5Y0	456 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	CASTOR2	A6NHX0	329 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	KRTAP29-1	A8MX34	341 aa	Predicted RBP	3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044		O00370	1275 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	PSMD14	O00487	310 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	ATP6AP2	O75787	350 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	GBA	P04062	536 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	PRSS1	P07477	247 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	ZFY	P08048	801 aa	Predicted RBP	3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	IGHV4-31	P0DP07	118 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	GP1BB	P13224	206 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	PDGFRA	P16234	1089 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	JAK1	P23458	1154 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	ACAT1	P24752	427 aa	Known RBP	3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	ITGA3	P26006	1051 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	HSD17B3	P37058	310 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	RPL21	P46778	160 aa	Known RBP	3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	BMX	P51813	675 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	CAPZA1	P52907	286 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	UBASH3A	P57075	661 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	HERV-K104	P61576	105 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	KLC1	Q07866	573 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	MZT1	Q08AG7	82 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	TUBB2A	Q13885	445 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	VEZF1	Q14119	521 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	CCDC6	Q16204	474 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	TWISTNB	Q3B726	338 aa	Predicted RBP	3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	PDLIM3	Q53GG5	364 aa	Predicted RBP	3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	TCTE1	Q5JU00	501 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	STPG1	Q5TH74	334 aa		3.49	□□□□□ -1.85
PTCD3-209	ENST00000472044	SFMBT2	Q5VUG0	894 aa		3.49	□□□□□ -1.85

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