RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 MAGP20916 626 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 OTX2P32243 289 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 NPY2RP49146 381 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 GRB7Q14451 532 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 PTRHD1Q6GMV3 140 aaKnown RBP15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 KRT222Q8N1A0 295 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 MPP5Q8N3R9 675 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 FAM26EQ8N5C1 309 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 EFCAB3Q8N7B9 438 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 OR2L8Q8NGY9 312 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 CPT1CQ8TCG5 803 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 MAIP1Q8WWC4 291 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 PANX3Q96QZ0 392 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 NUDT9Q9BW91 350 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 IL22Q9GZX6 179 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 TREX1Q9NSU2 369 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 TXLNGQ9NUQ3 528 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 IRAK4Q9NWZ3 460 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 EURLQ9NYK6 297 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 DHCR7Q9UBM7 475 aaKnown RBP15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 NDOR1Q9UHB4 597 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 GNPTGQ9UJJ9 305 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 PTRH2Q9Y3E5 179 aaKnown RBP15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 CCDC88CQ9P219 2028 aa15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 SPENQ96T58 3664 aaKnown RBP15.95■□□□□ 0.14
CCDC28B-204ENST00000469003 A6NL46 340 aa15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 KPNA5O15131 536 aa15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 SORBS2O94875 1100 aaKnown RBP15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 S1PR4O95977 384 aa15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 CD9P21926 228 aa15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 RPS3P23396 243 aaKnown RBP eCLIP15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 FOLR3P41439 243 aa15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 CRADDP78560 199 aa15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 BASP1P80723 227 aaKnown RBP15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 C4orf17Q53FE4 359 aa15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 ZNF662Q6ZS27 426 aa15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 MRGPREQ86SM8 312 aa15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 LRRC6Q86X45 466 aa15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 FAM20CQ8IXL6 584 aa15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 IL17FQ96PD4 163 aa15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 SMAD5Q99717 465 aaKnown RBP15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 NDC1Q9BTX1 674 aa15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 RAB11FIP5Q9BXF6 653 aa15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 P2RY12Q9H244 342 aa15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 INTS7Q9NVH2 962 aaKnown RBP15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 GPR83Q9NYM4 423 aa15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 BFARQ9NZS9 450 aa15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 IFT80Q9P2H3 777 aaPredicted RBP15.94■□□□□ 0.14
CCDC28B-204ENST00000469003 RASGRF2O14827 1237 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 VPS4BO75351 444 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 NDUFS3O75489 264 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 FKBP9O95302 570 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 IGHEP01854 428 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 NMBRP28336 390 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 GCGRP47871 477 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 NKAIN1Q4KMZ8 207 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 MRPL14Q6P1L8 145 aaKnown RBP15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 TTC23LQ6PF05 361 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 GSTA5Q7RTV2 222 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 MCATQ8IVS2 390 aaKnown RBP15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 C2orf73Q8N5S3 287 aaPredicted RBP15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 LMNTD1Q8N9Z9 388 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 GALNT11Q8NCW6 608 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 OR2Y1Q8NGV0 311 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 GSDMBQ8TAX9 411 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 DLG3Q92796 817 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 FER1L6-AS2Q96M78 137 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 MRM3Q9HC36 420 aaKnown RBP15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 CIDEBQ9UHD4 219 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 SLC39A10Q9ULF5 831 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 VPS4AQ9UN37 437 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 KLHL20Q9Y2M5 609 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 MAP4K5Q9Y4K4 846 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 MRFAP1Q9Y605 127 aa15.93■□□□□ 0.14
CCDC28B-204ENST00000469003 PEX12O00623 359 aa15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 CNOT3O75175 753 aaKnown RBP15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 FGGP02679 453 aa15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 CCDC175P0C221 793 aa15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 TPSB2P20231 275 aa15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 ARSFP54793 590 aa15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 CDK16Q00536 496 aa15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 TPSAB1Q15661 275 aa15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 JMJD6Q6NYC1 403 aaPredicted RBP15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 FIGLAQ6QHK4 219 aa15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 OTOAQ7RTW8 1153 aa15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 TAX1BP1Q86VP1 789 aa15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 DENND1AQ8TEH3 1009 aa15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 RAD51AP1Q96B01 352 aa15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 PTERQ96BW5 349 aa15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 KIFC1Q9BW19 673 aa15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 LZTFL1Q9NQ48 299 aa15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 C5AR2Q9P296 337 aa15.92■□□□□ 0.14
CCDC28B-204ENST00000469003 PRICKLE3O43900 615 aaPredicted RBP15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 C1orf105O95561 183 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 ATXN8OSP0DMR3 200 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 MGAT1P26572 445 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 ARNTP27540 789 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 UQCRFS1P47985 274 aa15.91■□□□□ 0.14
CCDC28B-204ENST00000469003 KCNJ1P48048 391 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms