RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 KRT36O76013 467 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 RHOBTB1O94844 696 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 HEXIM1O94992 359 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 AGTP01019 485 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 FAM90A13PP0C7W8 464 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 FAM90A24PP0C7X0 464 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 PABPC4LP0CB38 370 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 ZCCHC18P0CG32 403 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 CHN1P15882 459 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 FUT1P19526 365 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 MST1P26927 711 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 NMT1P30419 496 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 ETV5P41161 510 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 GPD2P43304 727 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 KCNJ1P48048 391 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 CDK7P50613 346 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 RAB28P51157 221 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 PSMD7P51665 324 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 MNAT1P51948 309 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 MFAP4P55083 255 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 UCP2P55851 309 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 EIF3BP55884 814 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 PDZK1IP1Q13113 114 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 TAZQ16635 292 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 RGS21Q2M5E4 152 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 KLHL26Q53HC5 615 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 ZNF766Q5HY98 468 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 ARMC12Q5T9G4 340 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 GKAP1Q5VSY0 366 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 DAB2IPQ5VWQ8 1189 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 DGAT2L7PQ6IED9 249 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 MRNIPQ6NTE8 343 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 RINT1Q6NUQ1 792 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 ZNF852Q6ZMS4 543 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 LRRC70Q7Z2Q7 622 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 KIAA1328Q86T90 577 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 FJX1Q86VR8 437 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 CAMK1DQ8IU85 385 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 ANKRD44Q8N8A2 993 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 SMRP1Q8NCR6 262 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 OR8J1Q8NGP2 316 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 PHOSPHO2Q8TCD6 241 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 CKAP2Q8WWK9 683 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 IGFBPL1Q8WX77 278 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 APBB2Q92870 758 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 GAD1Q99259 594 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 P2RY12Q9H244 342 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 POLR1BQ9H9Y6 1135 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 PLEKHA2Q9HB19 425 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 EPB41L5Q9HCM4 733 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 TRIM36Q9NQ86 728 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 TLR8Q9NR97 1041 aaKnown RBP4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 FBXO28Q9NVF7 368 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 FAM118AQ9NWS6 357 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 MPP6Q9NZW5 540 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 COPG2Q9UBF2 871 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 UXTQ9UBK9 157 aaPredicted RBP4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 GMEB2Q9UKD1 530 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 TSPAN16Q9UKR8 245 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 CDC14AQ9UNH5 594 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 CNTN6Q9UQ52 1028 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 PEG3Q9GZU2 1588 aa4.72□□□□□ -1.65
CCDC88A-210ENST00000468534 PARD3Q8TEW0 1356 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 C2orf92A0A1B0GVN3 265 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 A0A1W2PQF6 199 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 E9PMD0 336 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 ALOX15BO15296 676 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 CCNT1O60563 726 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 PRAMEF2O60811 474 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 B4GALT2O60909 372 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 CBFA2T3O75081 653 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 TRIM3O75382 744 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 CRCPO75575 148 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 ATP5HO75947 161 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 ERLIN2O94905 339 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 OR6B1O95007 311 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 SERPINA3P01011 423 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 FAM58BPP0C7Q3 252 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 TPH1P17752 444 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 ITGB8P26012 769 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 ACVR2AP27037 513 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 CD1BP29016 333 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 CDC25AP30304 524 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 FRKP42685 505 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 CDKN2AP42771 156 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 SUCLG1P53597 346 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 CRYBB1P53674 252 aaPredicted RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 ATP12AP54707 1039 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 POLR2GP62487 172 aaKnown RBP eCLIP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 GPC5P78333 572 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 TXNL4AP83876 142 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 XIAPP98170 497 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 MAB21L1Q13394 359 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 PPIGQ13427 754 aaKnown RBP eCLIP4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 DRP2Q13474 957 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 GRAPQ13588 217 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 SLC29A2Q14542 456 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 KCNAB1Q14722 419 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 GRM4Q14833 912 aa4.71□□□□□ -1.66
CCDC88A-210ENST00000468534 NPY5RQ15761 445 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms