RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 ZMYND15Q9H091 742 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 P2RY12Q9H244 342 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 INTS10Q9NVR2 710 aaKnown RBP11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 TMEM9Q9P0T7 183 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 ZNF624Q9P2J8 865 aaPredicted RBP11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 MTRF1LQ9UGC7 380 aaKnown RBP11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 GNPTGQ9UJJ9 305 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 VPS9D1Q9Y2B5 631 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 CROCCQ5TZA2 2017 aa11.58□□□□□ -0.56
SQSTM1-206ENST00000466342 ARHGAP10A1A4S6 786 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 PDZK1P1A8MUH7 402 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 DNAJB5O75953 348 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 S1PR4O95977 384 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 ERVK-10P10266 1014 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 RPL10P27635 214 aaKnown RBP11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 ADARP55265 1226 aaKnown RBP11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 EIF3BP55884 814 aaKnown RBP11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 CTBP1Q13363 440 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 SEPT7Q16181 437 aaKnown RBP11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 PRR30Q53SZ7 412 aaPredicted RBP11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 HSP90AA5PQ58FG0 334 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 ZNF789Q5FWF6 425 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 CEP128Q6ZU80 1094 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 CCDC25Q86WR0 208 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 DENND6AQ8IWF6 608 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 CNTN4Q8IWV2 1026 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 TRIM48Q8IWZ4 208 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 C2CD4AQ8NCU7 369 aaPredicted RBP11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 TSSK1BQ9BXA7 367 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 TBC1D10AQ9BXI6 508 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 COG4Q9H9E3 785 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 APMAPQ9HDC9 416 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 IARS2Q9NSE4 1012 aaKnown RBP11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 POT1Q9NUX5 634 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 SCHIP1Q9P0W5 487 aaPredicted RBP11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 FAM8A1Q9UBU6 413 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 FBXO5Q9UKT4 447 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 ACSL5Q9ULC5 683 aa11.57□□□□□ -0.56
SQSTM1-206ENST00000466342 CDC14CA4D256 554 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 A8MU76 341 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 H3BMM5 538 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 LIN7AO14910 233 aaPredicted RBP11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 TOX3O15405 576 aaPredicted RBP11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 CBX6O95503 412 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 C9P02748 559 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 ESR1P03372 595 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 RHOXF2BP0C7M4 288 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 BRAFP15056 766 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 ECHS1P30084 290 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 SSTR1P30872 391 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 HALP42357 657 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 MAGEA4P43358 317 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 PGDP52209 483 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 MPP1Q00013 466 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 MGAT5Q09328 741 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 CUL1Q13616 776 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 ZXDCQ2QGD7 858 aaPredicted RBP11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 CTSL3PQ5NE16 218 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 SNAP47Q5SQN1 464 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 SP5Q6BEB4 398 aaPredicted RBP11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 PTRHD1Q6GMV3 140 aaKnown RBP11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 TRMT10BQ6PF06 316 aaKnown RBP11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 MCEMP1Q8IX19 187 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 PALM2Q8IXS6 379 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 IFT20Q8IY31 132 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 CFAP206Q8IYR0 622 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 LILRA3Q8N6C8 439 aaPredicted RBP11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 LKAAEAR1Q8TD35 194 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 IFT81Q8WYA0 676 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 ELMO1Q92556 727 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 CXorf40BQ96DE9 158 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 POM121Q96HA1 1249 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 BIRC8Q96P09 236 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 PANX3Q96QZ0 392 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 PCNX1Q96RV3 2341 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 RHOXF2Q9BQY4 288 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 SLC25A23Q9BV35 468 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 TRIM55Q9BYV6 548 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 TSPYL1Q9H0U9 437 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 RUBCNLQ9H714 662 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 SLC40A1Q9NP59 571 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 MLXIPLQ9NP71 852 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 SLAMF7Q9NQ25 335 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 PPANQ9NQ55 473 aaKnown RBP11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 FBXO6Q9NRD1 293 aaPredicted RBP11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 MAP10Q9P2G4 905 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 KCND3Q9UK17 655 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 WDR37Q9Y2I8 494 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 CRYL1Q9Y2S2 319 aa11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 PCDHGA9Q9Y5G4 932 aaKnown RBP11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 MN1Q10571 1320 aaPredicted RBP11.56□□□□□ -0.56
SQSTM1-206ENST00000466342 IQCF5A8MTL0 148 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 POLR1CO15160 346 aaPredicted RBP11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 KATNA1O75449 491 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 CREG1O75629 220 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 UBXN7O94888 489 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 GSTA2P09210 222 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 ANKRD34CP0C6C1 535 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 SLC35G4P0C7Q5 338 aa11.55□□□□□ -0.56
SQSTM1-206ENST00000466342 AMD1P17707 334 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms