RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 FAM83FQ8NEG4 500 aaPredicted RBP12.16□□□□□ -0.46
HDAC4-208ENST00000463007 BRSK1Q8TDC3 778 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 FAR1Q8WVX9 515 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 CCSER2Q9H7U1 834 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 MAGEE1Q9HCI5 957 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 TLR8Q9NR97 1041 aaKnown RBP12.16□□□□□ -0.46
HDAC4-208ENST00000463007 PKP3Q9Y446 797 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 GMPPBQ9Y5P6 360 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 PMF1-BGLAPU3KQ54 211 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 CYP7B1O75881 506 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 EPOP01588 193 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 CD36P16671 472 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 PBX3P40426 434 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 RPS24P62847 133 aaKnown RBP12.16□□□□□ -0.46
HDAC4-208ENST00000463007 SP3Q02447 781 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 PON2Q15165 354 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 ANGPTL8Q6UXH0 198 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 CEP68Q76N32 757 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 CYP4Z1Q86W10 505 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 GATAD2AQ86YP4 633 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 SEPT5Q99719 369 aaPredicted RBP12.16□□□□□ -0.46
HDAC4-208ENST00000463007 INPP5KQ9BT40 448 aa12.16□□□□□ -0.46
HDAC4-208ENST00000463007 A0A096LPI6 279 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 E2F3O00716 465 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 STX7O15400 261 aaKnown RBP12.15□□□□□ -0.46
HDAC4-208ENST00000463007 C21orf33P30042 268 aaPredicted RBP12.15□□□□□ -0.46
HDAC4-208ENST00000463007 ZXDBP98169 803 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 SMARCB1Q12824 385 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 ARHGEF7Q14155 803 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 SF1Q15637 639 aaKnown RBP12.15□□□□□ -0.46
HDAC4-208ENST00000463007 GPR153Q6NV75 609 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 NECAB2Q7Z6G3 386 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 DCP2Q8IU60 420 aaKnown RBP12.15□□□□□ -0.46
HDAC4-208ENST00000463007 PXYLP1Q8TE99 480 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 RBM4BQ9BQ04 359 aaKnown RBP12.15□□□□□ -0.46
HDAC4-208ENST00000463007 DPH2Q9BQC3 489 aaPredicted RBP12.15□□□□□ -0.46
HDAC4-208ENST00000463007 MGME1Q9BQP7 344 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 RBM4Q9BWF3 364 aaKnown RBP12.15□□□□□ -0.46
HDAC4-208ENST00000463007 MROQ9BYG7 248 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 REXO4Q9GZR2 422 aaKnown RBP12.15□□□□□ -0.46
HDAC4-208ENST00000463007 ZNF106Q9H2Y7 1883 aaKnown RBP12.15□□□□□ -0.46
HDAC4-208ENST00000463007 SMPD4Q9NXE4 827 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 ABCG2Q9UNQ0 655 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 CCDC88CQ9P219 2028 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 C5orf42Q9H799 3197 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 LCHNA4D1U4 455 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 PER2O15055 1255 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 NDUFB5O43674 189 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 CREG1O75629 220 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 RPS17P08708 135 aaKnown RBP12.15□□□□□ -0.46
HDAC4-208ENST00000463007 IRF1P10914 325 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 PKMP14618 531 aaKnown RBP12.15□□□□□ -0.46
HDAC4-208ENST00000463007 CR2P20023 1033 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 TRPC1P48995 793 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 TYSND1Q2T9J0 566 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 CYP27C1Q4G0S4 372 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 FUT10Q6P4F1 479 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 TAS1R1Q7RTX1 841 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 GOLGA7Q7Z5G4 137 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 OR52J3Q8NH60 311 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 C2orf15Q8WU43 125 aaKnown RBP12.15□□□□□ -0.46
HDAC4-208ENST00000463007 EGLN2Q96KS0 407 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 RETREG1Q9H6L5 497 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 DDX28Q9NUL7 540 aaKnown RBP12.15□□□□□ -0.46
HDAC4-208ENST00000463007 SLC25A37Q9NYZ2 338 aa12.15□□□□□ -0.46
HDAC4-208ENST00000463007 PDP1Q9P0J1 537 aaPredicted RBP12.15□□□□□ -0.46
HDAC4-208ENST00000463007 SNPHO15079 494 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 VPS4BO75351 444 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 MFN2O95140 757 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 VIPP01282 170 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 PGRP06401 933 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 SELPP16109 830 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 TACR2P21452 398 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 ST13P50502 369 aaKnown RBP12.14□□□□□ -0.47
HDAC4-208ENST00000463007 DAB2P98082 770 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 FOXM1Q08050 763 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 SELENBP1Q13228 472 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 PWP1Q13610 501 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 DDX39BQ13838 428 aaKnown RBP12.14□□□□□ -0.47
HDAC4-208ENST00000463007 GTF2H2Q13888 395 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 CLCA4Q14CN2 919 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 ARMC12Q5T9G4 340 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 PTRHD1Q6GMV3 140 aaKnown RBP12.14□□□□□ -0.47
HDAC4-208ENST00000463007 GTF2H2CQ6P1K8 395 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 FAM151BQ6UXP7 276 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 ZDHHC21Q8IVQ6 265 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 ADHFE1Q8IWW8 467 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 RHEBL1Q8TAI7 183 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 PROX1Q92786 737 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 MUL1Q969V5 352 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 PYCR2Q96C36 320 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 LGALS12Q96DT0 336 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 WDR12Q9GZL7 423 aaKnown RBP12.14□□□□□ -0.47
HDAC4-208ENST00000463007 DERL2Q9GZP9 239 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 DNMT3BQ9UBC3 853 aaKnown RBP12.14□□□□□ -0.47
HDAC4-208ENST00000463007 INTS6Q9UL03 887 aaKnown RBP12.14□□□□□ -0.47
HDAC4-208ENST00000463007 SCN8AQ9UQD0 1980 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 TYW5A2RUC4 315 aaKnown RBP12.14□□□□□ -0.47
HDAC4-208ENST00000463007 TULP3O75386 442 aa12.14□□□□□ -0.47
HDAC4-208ENST00000463007 NTRK1P04629 796 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms