RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 CCNFP41002 786 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 BDKRB1P46663 353 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 GABRA4P48169 554 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 UGT8Q16880 541 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 DEFB110Q30KQ9 67 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 ZNF470Q6ECI4 717 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 CNSTQ6PJW8 725 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 SYTL1Q8IYJ3 562 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 C2orf73Q8N5S3 287 aaPredicted RBP20.46■□□□□ 0.87
HMGB3-205ENST00000455596 C9orf43Q8TAL5 461 aaPredicted RBP20.46■□□□□ 0.87
HMGB3-205ENST00000455596 MAGEC3Q8TD91 643 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 DDX47Q9H0S4 455 aaKnown RBP20.46■□□□□ 0.87
HMGB3-205ENST00000455596 CAMSAP3Q9P1Y5 1249 aaPredicted RBP20.46■□□□□ 0.87
HMGB3-205ENST00000455596 MAD1L1Q9Y6D9 718 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 AP1M2Q9Y6Q5 423 aa20.46■□□□□ 0.87
HMGB3-205ENST00000455596 CTAGE9A4FU28 777 aa20.45■□□□□ 0.86
HMGB3-205ENST00000455596 USP27XA6NNY8 438 aa20.45■□□□□ 0.86
HMGB3-205ENST00000455596 ATP5DP30049 168 aa20.45■□□□□ 0.86
HMGB3-205ENST00000455596 NFKB2Q00653 900 aa20.45■□□□□ 0.86
HMGB3-205ENST00000455596 GBX1Q14549 363 aa20.45■□□□□ 0.86
HMGB3-205ENST00000455596 LONRF1Q17RB8 773 aa20.45■□□□□ 0.86
HMGB3-205ENST00000455596 RNASEH2BQ5TBB1 312 aaKnown RBP20.45■□□□□ 0.86
HMGB3-205ENST00000455596 LCN10Q6JVE6 187 aa20.45■□□□□ 0.86
HMGB3-205ENST00000455596 TAX1BP1Q86VP1 789 aa20.45■□□□□ 0.86
HMGB3-205ENST00000455596 FAM20CQ8IXL6 584 aa20.45■□□□□ 0.86
HMGB3-205ENST00000455596 LMNTD1Q8N9Z9 388 aa20.45■□□□□ 0.86
HMGB3-205ENST00000455596 CALML6Q8TD86 181 aa20.45■□□□□ 0.86
HMGB3-205ENST00000455596 FAM136AQ96C01 138 aa20.45■□□□□ 0.86
HMGB3-205ENST00000455596 SIGLEC10Q96LC7 697 aa20.45■□□□□ 0.86
HMGB3-205ENST00000455596 DPH2Q9BQC3 489 aaPredicted RBP20.45■□□□□ 0.86
HMGB3-205ENST00000455596 NLNQ9BYT8 704 aa20.45■□□□□ 0.86
HMGB3-205ENST00000455596 INTS7Q9NVH2 962 aaKnown RBP20.45■□□□□ 0.86
HMGB3-205ENST00000455596 ASIC3Q9UHC3 531 aa20.45■□□□□ 0.86
HMGB3-205ENST00000455596 RUVBL2Q9Y230 463 aaKnown RBP20.45■□□□□ 0.86
HMGB3-205ENST00000455596 MAN2B2Q9Y2E5 1009 aa20.45■□□□□ 0.86
HMGB3-205ENST00000455596 H3BMH7 237 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 DNALI1O14645 258 aaPredicted RBP20.44■□□□□ 0.86
HMGB3-205ENST00000455596 HCRTR1O43613 425 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 MAGP20916 626 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 AGXTP21549 392 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 PTK6Q13882 451 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 PTCHD3Q3KNS1 767 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 PCGF5Q86SE9 256 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 LMNTD2Q8IXW0 634 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 AGGF1Q8N302 714 aaeCLIP20.44■□□□□ 0.86
HMGB3-205ENST00000455596 DNAJC22Q8N4W6 341 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 ZBTB2Q8N680 514 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 ENDOVQ8N8Q3 282 aaKnown RBP20.44■□□□□ 0.86
HMGB3-205ENST00000455596 THAP4Q8WY91 577 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 SLCO2A1Q92959 643 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 ABHD17AQ96GS6 310 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 PDLIM2Q96JY6 352 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 SPRTNQ9H040 489 aaPredicted RBP20.44■□□□□ 0.86
HMGB3-205ENST00000455596 CCDC68Q9H2F9 335 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 C20orf96Q9NUD7 363 aaPredicted RBP20.44■□□□□ 0.86
HMGB3-205ENST00000455596 IRAK4Q9NWZ3 460 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 PCYOX1Q9UHG3 505 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 TSR3Q9UJK0 312 aaKnown RBP20.44■□□□□ 0.86
HMGB3-205ENST00000455596 SNX7Q9UNH6 387 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 PLCL2Q9UPR0 1127 aa20.44■□□□□ 0.86
HMGB3-205ENST00000455596 ZSCAN9O15535 394 aaPredicted RBP20.43■□□□□ 0.86
HMGB3-205ENST00000455596 SUV39H1O43463 412 aa20.43■□□□□ 0.86
HMGB3-205ENST00000455596 FKBP9O95302 570 aa20.43■□□□□ 0.86
HMGB3-205ENST00000455596 MATN4O95460 622 aa20.43■□□□□ 0.86
HMGB3-205ENST00000455596 GNG11P61952 73 aa20.43■□□□□ 0.86
HMGB3-205ENST00000455596 CTBP1Q13363 440 aa20.43■□□□□ 0.86
HMGB3-205ENST00000455596 IL10RAQ13651 578 aa20.43■□□□□ 0.86
HMGB3-205ENST00000455596 SF1Q15637 639 aaKnown RBP20.43■□□□□ 0.86
HMGB3-205ENST00000455596 CCSMST1Q4G0I0 132 aa20.43■□□□□ 0.86
HMGB3-205ENST00000455596 TLDC1Q6P9B6 456 aa20.43■□□□□ 0.86
HMGB3-205ENST00000455596 FAM198BQ6UWH4 519 aa20.43■□□□□ 0.86
HMGB3-205ENST00000455596 DENND6AQ8IWF6 608 aa20.43■□□□□ 0.86
HMGB3-205ENST00000455596 FBXO6Q9NRD1 293 aaPredicted RBP20.43■□□□□ 0.86
HMGB3-205ENST00000455596 GALPQ9UBC7 116 aa20.43■□□□□ 0.86
HMGB3-205ENST00000455596 SRPK3Q9UPE1 567 aa20.43■□□□□ 0.86
HMGB3-205ENST00000455596 SEC16AO15027 2179 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 C9J4A7 227 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 MKRN2OSH3BPM6 223 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 RFPL1O75677 317 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 CAPN1P07384 714 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 SLC1A2P43004 574 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 PMS2P54278 862 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 KLHL38Q2WGJ6 581 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 ACSBG2Q5FVE4 666 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 ZNF385CQ66K41 422 aaPredicted RBP20.42■□□□□ 0.86
HMGB3-205ENST00000455596 RHBDD2Q6NTF9 364 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 ATG14Q6ZNE5 492 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 PTRH1Q86Y79 214 aaKnown RBP20.42■□□□□ 0.86
HMGB3-205ENST00000455596 APLFQ8IW19 511 aaPredicted RBP20.42■□□□□ 0.86
HMGB3-205ENST00000455596 SERBP1Q8NC51 408 aaKnown RBP eCLIP20.42■□□□□ 0.86
HMGB3-205ENST00000455596 HMGCLL1Q8TB92 370 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 CAPZA3Q96KX2 299 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 ZNF71Q9NQZ8 489 aaPredicted RBP20.42■□□□□ 0.86
HMGB3-205ENST00000455596 EURLQ9NYK6 297 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 SPATA7Q9P0W8 599 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 TCFL5Q9UL49 500 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 KLHL20Q9Y2M5 609 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 FAM169AQ9Y6X4 670 aa20.42■□□□□ 0.86
HMGB3-205ENST00000455596 TNRC6AQ8NDV7 1962 aaKnown RBP20.41■□□□□ 0.86
HMGB3-205ENST00000455596 PRICKLE3O43900 615 aaPredicted RBP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms