RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 CROTQ9UKG9 612 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 MRPS18BQ9Y676 258 aaKnown RBP17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 SPTA1P02549 2419 aa17.5■□□□□ 0.39
SQSTM1-204ENST00000453046 BOD1L1Q8NFC6 3051 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 TRBV5-4A0A0C4DH59 114 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 CCDC78A2IDD5 438 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 KATNA1O75449 491 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 INHBAP08476 426 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 EBLN1P0CF75 366 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 PRSS56P0CW18 603 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 FOLR1P15328 257 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 ARCN1P48444 511 aaKnown RBP17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 PRAMEP78395 509 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 HSD11B2P80365 405 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 NFKB2Q00653 900 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 CACNG1Q06432 222 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 KCNAB2Q13303 367 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 DEFB109BQ30KR1 87 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 HSP90B2PQ58FF3 399 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 TMTC4Q5T4D3 741 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 AFTPHQ6ULP2 937 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 MTERF4Q7Z6M4 381 aaKnown RBP17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 BPHLQ86WA6 291 aaPredicted RBP17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 CTAGE3PQ8IX95 158 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 CALML6Q8TD86 181 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 STMN4Q9H169 189 aaPredicted RBP17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 COG4Q9H9E3 785 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 PPANQ9NQ55 473 aaKnown RBP17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 FGF21Q9NSA1 209 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 ZNF180Q9UJW8 692 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 KCND3Q9UK17 655 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 PADI1Q9ULC6 663 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 IKBKGQ9Y6K9 419 aa17.49■□□□□ 0.39
SQSTM1-204ENST00000453046 IGLV3-16A0A075B6K0 115 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 POC1B-GALNT4F8VUJ3 575 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 ZBTB11O95625 1053 aaPredicted RBP17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 ERVK-10P10266 1014 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 POLR2CP19387 275 aaPredicted RBP17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 GCAP28676 217 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 OAS2P29728 719 aaKnown RBP17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 MSH2P43246 934 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 TAOK1Q7L7X3 1001 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 SLC26A11Q86WA9 606 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 CLDN19Q8N6F1 224 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 PPM1NQ8N819 430 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 ACVR1CQ8NER5 493 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 APOBEC4Q8WW27 367 aaKnown RBP17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 LCN9Q8WX39 176 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 PGM2Q96G03 612 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 SGSM3Q96HU1 749 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 FCRL4Q96PJ5 515 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 CPNE1Q99829 537 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 SRMSQ9H3Y6 488 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 TMBIM4Q9HC24 238 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 SMYD2Q9NRG4 433 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 SOHLH2Q9NX45 425 aa17.48■□□□□ 0.39
SQSTM1-204ENST00000453046 GSAPA4D1B5 854 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 SMIM23A6NLE4 172 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 PYCARD-AS1I3L0S3 204 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 AP2A2O94973 939 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 VAPBO95292 243 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 TIAF1O95411 115 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 CDH3P22223 829 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 F8A1P23610 371 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 ATP5DP30049 168 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 SLCO1A2P46721 670 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 SERPINB9P50453 376 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 THOC5Q13769 683 aaKnown RBP17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 DBN1Q16643 649 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 HSP90AA5PQ58FG0 334 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 ATP1A1-AS1Q5TC04 95 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 AGBL2Q5U5Z8 902 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 PWWP2BQ6NUJ5 590 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 ADGRD1Q6QNK2 874 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 CERS6Q6ZMG9 384 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 KIAA0408Q6ZU52 694 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 MICALCLQ6ZW33 695 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 GALNT7Q86SF2 657 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 PIANPQ8IYJ0 282 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 D2HGDHQ8N465 521 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.47■□□□□ 0.391e-7■■■□□ 14.6
SQSTM1-204ENST00000453046 LHX9Q9NQ69 397 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 TUBD1Q9UJT1 453 aa17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 TLN1Q9Y490 2541 aaKnown RBP17.47■□□□□ 0.39
SQSTM1-204ENST00000453046 CXorf49A8MYA2 514 aaPredicted RBP17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 GOLGA8KD6RF30 607 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 MATN2O00339 956 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 QSOX1O00391 747 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 RGS16O15492 202 aaPredicted RBP17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 NTRK1P04629 796 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 GSTM1P09488 218 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 PDHA2P29803 388 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 GP5P40197 560 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 NSG1P42857 185 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 CD151P48509 253 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 KPNA2P52292 529 aaKnown RBP17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 GSTM4Q03013 218 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 ILF2Q12905 390 aaKnown RBP17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 RPA4Q13156 261 aa17.46■□□□□ 0.39
SQSTM1-204ENST00000453046 ERV3-1Q14264 604 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms