RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 OR6P1Q8NGX9 317 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 ZUFSPQ96AP4 578 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 BARD1Q99728 777 aaKnown RBP12.78□□□□□ -0.36
HMGB3-204ENST00000448905 WDR77Q9BQA1 342 aaPredicted RBP12.78□□□□□ -0.36
HMGB3-204ENST00000448905 EPS8L2Q9H6S3 715 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 IMPACTQ9P2X3 320 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 AMFRQ9UKV5 643 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 MRFAP1Q9Y605 127 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 PRSS21Q9Y6M0 314 aa12.78□□□□□ -0.36
HMGB3-204ENST00000448905 USP9YO00507 2555 aaPredicted RBP12.77□□□□□ -0.36
HMGB3-204ENST00000448905 CCDC162PA2VCL2 907 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 BTNL10A8MVZ5 291 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 MIF4GDA9UHW6 222 aaKnown RBP12.77□□□□□ -0.37
HMGB3-204ENST00000448905 TARM1B6A8C7 271 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 E7EVH7 732 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 HCRTR1O43613 425 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 FKBP9O95302 570 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 CLDN1O95832 211 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 UMODP07911 640 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 TPBGLP0DKB5 382 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 COL8A1P27658 744 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 DCTP40126 519 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 CDC16Q13042 620 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 TLR1Q15399 786 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 FASTKD1Q53R41 847 aaKnown RBP12.77□□□□□ -0.37
HMGB3-204ENST00000448905 CRB2Q5IJ48 1285 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 AARS2Q5JTZ9 985 aaKnown RBP12.77□□□□□ -0.37
HMGB3-204ENST00000448905 ZNF787Q6DD87 383 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 NAPRTQ6XQN6 538 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 PPP1R21Q6ZMI0 780 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 PEX26Q7Z412 305 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 SYCE1Q8N0S2 351 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 TTC29Q8NA56 475 aaPredicted RBP12.77□□□□□ -0.37
HMGB3-204ENST00000448905 OR4L1Q8NH43 312 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 CFAP61Q8NHU2 1237 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 FLVCR1-AS1Q8TAF5 88 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 PPP4R1Q8TF05 950 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 HDAC10Q969S8 669 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 PANX2Q96RD6 677 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 CARD6Q9BX69 1037 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 LHPPQ9H008 270 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 RUBCNLQ9H714 662 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 SEMA3GQ9NS98 782 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 FBXL4Q9UKA2 621 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 PLAGL1Q9UM63 463 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 PCDHGA10Q9Y5H3 936 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 DUSP10Q9Y6W6 482 aa12.77□□□□□ -0.37
HMGB3-204ENST00000448905 DSCR3O14972 297 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 KPNA5O15131 536 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 ONECUT2O95948 504 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 MAGP20916 626 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 ADRA1DP25100 572 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 CCR7P32248 378 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 CARSP49589 748 aaKnown RBP12.76□□□□□ -0.37
HMGB3-204ENST00000448905 CSE1LP55060 971 aaKnown RBP12.76□□□□□ -0.37
HMGB3-204ENST00000448905 PRAMEP78395 509 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 OCA2Q04671 838 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 TMED2Q15363 201 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 NKG7Q16617 165 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 B3GNTL1Q67FW5 361 aaPredicted RBP12.76□□□□□ -0.37
HMGB3-204ENST00000448905 FCRL6Q6DN72 434 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 FIGLAQ6QHK4 219 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 AFTPHQ6ULP2 937 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 UNC5DQ6UXZ4 953 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 CUZD1Q86UP6 607 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 KCNMB4Q86W47 210 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 SLC22A15Q8IZD6 547 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 ALG3Q92685 438 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 LMF1Q96S06 567 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 RANBP9Q96S59 729 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 TMEM121Q9BTD3 319 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 RAB11FIP5Q9BXF6 653 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 SLC26A1Q9H2B4 701 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 CUTCQ9NTM9 273 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 PIH1D1Q9NWS0 290 aaKnown RBP12.76□□□□□ -0.37
HMGB3-204ENST00000448905 RIMKLBQ9ULI2 386 aa12.76□□□□□ -0.37
HMGB3-204ENST00000448905 OR51F1A6NGY5 319 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 LRRTM2O43300 516 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 OR1I1O60431 355 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 CTSBP07858 339 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 EDN3P14138 238 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 PKLRP30613 574 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 FOXN2P32314 431 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 GRIA3P42263 894 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 TSFMP43897 325 aaKnown RBP12.75□□□□□ -0.37
HMGB3-204ENST00000448905 CACNA1DQ01668 2161 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 ZNF169Q14929 603 aaPredicted RBP12.75□□□□□ -0.37
HMGB3-204ENST00000448905 RBBP7Q16576 425 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 HIF1AQ16665 826 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 TUBB8Q3ZCM7 444 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 CCDC38Q502W7 563 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 TSTD2Q5T7W7 516 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 PTRHD1Q6GMV3 140 aaKnown RBP12.75□□□□□ -0.37
HMGB3-204ENST00000448905 AADACL2Q6P093 401 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 IGFL2Q6UWQ7 119 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 DCUN1D3Q8IWE4 304 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 PARP9Q8IXQ6 854 aa12.75□□□□□ -0.37
HMGB3-204ENST00000448905 TAB3Q8N5C8 712 aaPredicted RBP12.75□□□□□ -0.37
HMGB3-204ENST00000448905 C2orf73Q8N5S3 287 aaPredicted RBP12.75□□□□□ -0.37
HMGB3-204ENST00000448905 OR52K1Q8NGK4 314 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms