RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 TAC1P20366 129 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 CSRP1P21291 193 aaKnown RBP15.3■□□□□ 0.04
USP40-206ENST00000443711 PPM1FP49593 454 aaPredicted RBP15.3■□□□□ 0.04
USP40-206ENST00000443711 HNMTP50135 292 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 PNLIPRP1P54315 467 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 OR1D5P58170 312 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 GPS2Q13227 327 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 CYP2A13Q16696 494 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 TTMPQ5BVD1 217 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 PERM1Q5SV97 790 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 SULT1C3Q6IMI6 304 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 MBOAT1Q6ZNC8 495 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 SPRED1Q7Z699 444 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 SYTL1Q8IYJ3 562 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 TCAIMQ8N3R3 496 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 TMEM151AQ8N4L1 468 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 OR10G6Q8NH81 332 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 TCP10LQ8TDR4 215 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 DENND1AQ8TEH3 1009 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 ZNF480Q8WV37 535 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 AHCYL2Q96HN2 611 aaKnown RBP15.3■□□□□ 0.04
USP40-206ENST00000443711 IL17FQ96PD4 163 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 MENTQ9BUN1 341 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 KCNK9Q9NPC2 374 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 STOX2Q9P2F5 926 aaPredicted RBP15.3■□□□□ 0.04
USP40-206ENST00000443711 CPSF2Q9P2I0 782 aaKnown RBP15.3■□□□□ 0.04
USP40-206ENST00000443711 MID2Q9UJV3 735 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 EMCNQ9ULC0 261 aa15.3■□□□□ 0.04
USP40-206ENST00000443711 IGHV1OR21-1A0A087WYE8 117 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 NCF1BA6NI72 391 aaPredicted RBP15.29■□□□□ 0.04
USP40-206ENST00000443711 NCF1CA8MVU1 366 aaPredicted RBP15.29■□□□□ 0.04
USP40-206ENST00000443711 TARM1B6A8C7 271 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 UBXN8O00124 270 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 TK2O00142 265 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 SLC30A4O14863 429 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 PRPF4O43172 522 aaKnown RBP eCLIP15.29■□□□□ 0.04
USP40-206ENST00000443711 SMIM24O75264 130 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 PROS1P07225 676 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 GP1BAP07359 652 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 ERGP11308 486 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 NCF1P14598 390 aaPredicted RBP15.29■□□□□ 0.04
USP40-206ENST00000443711 TYRP1P17643 537 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 IMPA1P29218 277 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 PLA2G5P39877 138 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 GPLD1P80108 840 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 TRIP6Q15654 476 aaKnown RBP15.29■□□□□ 0.04
USP40-206ENST00000443711 HSP90B2PQ58FF3 399 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 ARMC6Q6NXE6 501 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 AGTRAPQ6RW13 159 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 GLRX5Q86SX6 157 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 OOSP2Q86WS3 158 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 CCDC63Q8NA47 563 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 PDPRQ8NCN5 879 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 DEFB124Q8NES8 71 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 HMGCLL1Q8TB92 370 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 RDH11Q8TC12 318 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 SMPDL3AQ92484 453 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 RHBDF1Q96CC6 855 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 CCDC3Q9BQI4 270 aa15.29■□□□□ 0.04
USP40-206ENST00000443711 BTN3A3O00478 584 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 TM4SF5O14894 197 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 DUX1O43812 170 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 KLK8O60259 260 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 CHRM5P08912 532 aaPredicted RBP15.28■□□□□ 0.04
USP40-206ENST00000443711 SBK3P0C264 359 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 MTHFD2P13995 350 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 GFAPP14136 432 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 SDHBP21912 280 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 RPA3P35244 121 aaPredicted RBP15.28■□□□□ 0.04
USP40-206ENST00000443711 ACADVLP49748 655 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 PRKAA1Q13131 559 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 ILKQ13418 452 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 SQSTM1Q13501 440 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 AMZ1Q400G9 498 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 ADGRF3Q8IZF5 1079 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 FBXO39Q8N4B4 442 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 FAM111AQ96PZ2 611 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 NRTNQ99748 197 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 ATG10Q9H0Y0 220 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 C12orf65Q9H3J6 166 aaKnown RBP15.28■□□□□ 0.04
USP40-206ENST00000443711 CNOT10Q9H9A5 744 aaKnown RBP15.28■□□□□ 0.04
USP40-206ENST00000443711 HRASLS2Q9NWW9 162 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 WWOXQ9NZC7 414 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 SLC17A7Q9P2U7 560 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 PTBP2Q9UKA9 531 aaKnown RBP15.28■□□□□ 0.04
USP40-206ENST00000443711 CDV3Q9UKY7 258 aaKnown RBP15.28■□□□□ 0.04
USP40-206ENST00000443711 ENTPD2Q9Y5L3 495 aa15.28■□□□□ 0.04
USP40-206ENST00000443711 PIPSLA2A3N6 862 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 OR5K3A6NET4 321 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 C2orf74A8MZ97 194 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 E7ENX8 843 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 MATN2O00339 956 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 TM9SF1O15321 606 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 ZWINTO95229 277 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 MYL2P10916 166 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 CPA3P15088 417 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 POLR2CP19387 275 aaPredicted RBP15.27■□□□□ 0.04
USP40-206ENST00000443711 CCND1P24385 295 aa15.27■□□□□ 0.04
USP40-206ENST00000443711 ATP5F1P24539 256 aaPredicted RBP15.27■□□□□ 0.04
USP40-206ENST00000443711 CD1CP29017 333 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms