RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 PFDN4Q9NQP4 134 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 ZNF490Q9ULM2 529 aaPredicted RBP20.53■□□□□ 0.88
PTPRF-207ENST00000436724 ULK1O75385 1050 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 IDO1P14902 403 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 ANPEPP15144 967 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 IGFALSP35858 605 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 TFF2Q03403 129 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 RFTN2Q52LD8 501 aaPredicted RBP20.53■□□□□ 0.88
PTPRF-207ENST00000436724 C6orf163Q5TEZ5 329 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 C1orf146Q5VVC0 180 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 THOC6Q86W42 341 aaKnown RBP20.53■□□□□ 0.88
PTPRF-207ENST00000436724 MRGBPQ9NV56 204 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 AIG1Q9NVV5 245 aa20.53■□□□□ 0.88
PTPRF-207ENST00000436724 MANBAO00462 879 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 NR5A2O00482 541 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 CFLARO15519 480 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 ACADMP11310 421 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 PAX7P23759 505 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 ACADLP28330 430 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 ACSL1P33121 698 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 DPP6P42658 865 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 ACADVLP49748 655 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 NEK2P51955 445 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 ERVK-8P63133 956 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 ART3Q13508 389 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 MMEL1Q495T6 779 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 TTC23LQ6PF05 361 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 Q6ZS52 159 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 SPATA19Q7Z5L4 167 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 HPS6Q86YV9 775 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 KBTBD2Q8IY47 623 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 CCDC124Q96CT7 223 aaKnown RBP20.52■□□□□ 0.88
PTPRF-207ENST00000436724 OR4K3Q96R72 315 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 OR52A5Q9H2C5 316 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 COL6A3P12111 3177 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 TCRBV21S2A2A0A5A6 115 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 LATO43561 262 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 AP5B1Q2VPB7 878 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 REP15Q6BDI9 236 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 Q7L0L9 218 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 CHST15Q7LFX5 561 aaPredicted RBP20.52■□□□□ 0.88
PTPRF-207ENST00000436724 PHC3Q8NDX5 983 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 ZNF480Q8WV37 535 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 MRPL1Q9BYD6 325 aaKnown RBP20.52■□□□□ 0.88
PTPRF-207ENST00000436724 ZDHHC5Q9C0B5 715 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 DPEP2Q9H4A9 486 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 ANGPTL2Q9UKU9 493 aa20.52■□□□□ 0.88
PTPRF-207ENST00000436724 CFAP20Q9Y6A4 193 aaKnown RBP20.52■□□□□ 0.88
PTPRF-207ENST00000436724 RPL10P27635 214 aaKnown RBP20.51■□□□□ 0.87
PTPRF-207ENST00000436724 HALP42357 657 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 CHIT1Q13231 466 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 MAPRE2Q15555 327 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 GSTA3Q16772 222 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 VPS26BQ4G0F5 336 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 PGM2L1Q6PCE3 622 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 WDR41Q9HAD4 459 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 MRPL40Q9NQ50 206 aaKnown RBP20.51■□□□□ 0.87
PTPRF-207ENST00000436724 FZD4Q9ULV1 537 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 SCML1Q9UN30 329 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 KCNE1BA0A087WTH5 132 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 A0A1W2PPC1 479 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 PDYNP01213 254 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 CD22P20273 847 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 UFM1P61960 85 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 STX5Q13190 355 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 HABP4Q5JVS0 413 aaKnown RBP20.51■□□□□ 0.87
PTPRF-207ENST00000436724 CAPRIN2Q6IMN6 1127 aaKnown RBP20.51■□□□□ 0.87
PTPRF-207ENST00000436724 LAYNQ6UX15 382 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 C16orf89Q6UX73 402 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 RGL4Q8IZJ4 473 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 ATL1Q8WXF7 558 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 USP7Q93009 1102 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 NRTNQ99748 197 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 SLC25A23Q9BV35 468 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 PHPT1Q9NRX4 125 aaPredicted RBP20.51■□□□□ 0.87
PTPRF-207ENST00000436724 ASF1AQ9Y294 204 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 NCKAP1Q9Y2A7 1128 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 LRCH1Q9Y2L9 728 aa20.51■□□□□ 0.87
PTPRF-207ENST00000436724 VCANP13611 3396 aa20.5■□□□□ 0.87
PTPRF-207ENST00000436724 E7EQ34 232 aa20.5■□□□□ 0.87
PTPRF-207ENST00000436724 SCAMP1O15126 338 aa20.5■□□□□ 0.87
PTPRF-207ENST00000436724 MYCLP1P12525 358 aaPredicted RBP20.5■□□□□ 0.87
PTPRF-207ENST00000436724 GABRG2P18507 467 aa20.5■□□□□ 0.87
PTPRF-207ENST00000436724 CAPN3P20807 821 aa20.5■□□□□ 0.87
PTPRF-207ENST00000436724 MAPK9P45984 424 aa20.5■□□□□ 0.87
PTPRF-207ENST00000436724 TPMTP51580 245 aa20.5■□□□□ 0.87
PTPRF-207ENST00000436724 KLC1Q07866 573 aa20.5■□□□□ 0.87
PTPRF-207ENST00000436724 TSTA3Q13630 321 aaPredicted RBP20.5■□□□□ 0.87
PTPRF-207ENST00000436724 ZRSR2Q15696 482 aaKnown RBP20.5■□□□□ 0.87
PTPRF-207ENST00000436724 SMAD2Q15796 467 aaKnown RBP20.5■□□□□ 0.87
PTPRF-207ENST00000436724 MAP7D1Q3KQU3 841 aa20.5■□□□□ 0.87
PTPRF-207ENST00000436724 EOGTQ5NDL2 527 aa20.5■□□□□ 0.87
PTPRF-207ENST00000436724 RETREG3Q86VR2 466 aa20.5■□□□□ 0.87
PTPRF-207ENST00000436724 SYTL1Q8IYJ3 562 aa20.5■□□□□ 0.87
PTPRF-207ENST00000436724 RNF175Q8N4F7 328 aa20.5■□□□□ 0.87
PTPRF-207ENST00000436724 OR5AR1Q8NGP9 310 aa20.5■□□□□ 0.87
PTPRF-207ENST00000436724 HMGB4Q8WW32 186 aa20.5■□□□□ 0.87
PTPRF-207ENST00000436724 CDRT15Q96T59 188 aa20.5■□□□□ 0.87
PTPRF-207ENST00000436724 PREBQ9HCU5 417 aa20.5■□□□□ 0.87
PTPRF-207ENST00000436724 MMP17Q9ULZ9 603 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms