RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 TAB1Q15750 504 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 CHRNA6Q15825 494 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 ZNF773Q6PK81 442 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 HORMAD1Q86X24 394 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 POC5Q8NA72 575 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 FAM83FQ8NEG4 500 aaPredicted RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 SCAMP4Q969E2 229 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 GTPBP3Q969Y2 492 aaKnown RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.45□□□□□ -1.06
USP40-203ENST00000427112 APIPQ96GX9 242 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 MBOAT4Q96T53 435 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 ELOVL6Q9H5J4 265 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 TFB2MQ9H5Q4 396 aaKnown RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 INTS10Q9NVR2 710 aaKnown RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 TMEM248Q9NWD8 314 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 SEPT3Q9UH03 358 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 PDCD11Q14690 1871 aaKnown RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 LOC285095A0A1B0GVY8 99 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 FAM234BA2RU67 622 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 SLC1A7O00341 560 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 SH3BP5O60239 455 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 CREG1O75629 220 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 WDR47O94967 919 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 SEC24AO95486 1093 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 TSPAN12O95859 305 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 IGLV3-25P01717 112 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 S100A3P33764 101 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 FEN1P39748 380 aaKnown RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 GP2P55259 537 aaKnown RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 ARPC4P59998 168 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 DMC1Q14565 340 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 ZNF829Q3KNS6 432 aaPredicted RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 LDLRAD1Q5T700 205 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 ZFAND4Q86XD8 727 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 ARL14EPQ8N8R7 260 aaPredicted RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 DBF4BQ8NFT6 615 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 OR4K1Q8NGD4 311 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 NECTIN4Q96NY8 510 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 PANX1Q96RD7 426 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 SYT17Q9BSW7 474 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 REXO4Q9GZR2 422 aaKnown RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 LRTM1Q9HBL6 345 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 ABCD2Q9UBJ2 740 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 PSME2Q9UL46 239 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 LCHNA4D1U4 455 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 SLC22A2O15244 555 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 CACNG3O60359 315 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 PDYNP01213 254 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 RAP2AP10114 183 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 AKR1A1P14550 325 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 HLA-DPA1P20036 260 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 DCTP40126 519 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 HLCSP50747 726 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 SMAD3P84022 425 aaKnown RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 IL10RBQ08334 325 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 INTS11Q5TA45 600 aaKnown RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 THOC7Q6I9Y2 204 aaKnown RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 AFTPHQ6ULP2 937 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 C11orf96Q7Z7L8 435 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 VRK3Q8IV63 474 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 EID3Q8N140 333 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 ZBTB8BQ8NAP8 495 aaPredicted RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 ZUFSPQ96AP4 578 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 TRIM54Q9BYV2 358 aa8.45□□□□□ -1.06
USP40-203ENST00000427112 EIF3LQ9Y262 564 aaKnown RBP8.45□□□□□ -1.06
USP40-203ENST00000427112 A0A0G2JN53 185 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 BBIP1A8MTZ0 92 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 RFXANKO14593 260 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 LRRTM2O43300 516 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 EEDO75530 441 aaKnown RBP8.44□□□□□ -1.06
USP40-203ENST00000427112 RPS17P08708 135 aaKnown RBP8.44□□□□□ -1.06
USP40-203ENST00000427112 BCKDHAP12694 445 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 CDH1P12830 882 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 CTSOP43234 321 aaPredicted RBP8.44□□□□□ -1.06
USP40-203ENST00000427112 RNF144AP50876 292 aaPredicted RBP8.44□□□□□ -1.06
USP40-203ENST00000427112 ADARB1P78563 741 aaKnown RBP8.44□□□□□ -1.06
USP40-203ENST00000427112 NFKB2Q00653 900 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 CAP1Q01518 475 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 EMX2Q04743 252 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 PRKCZQ05513 592 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 CRHR2Q13324 411 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 INAVAQ3KP66 663 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 PRSS36Q5K4E3 855 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 LRRC66Q68CR7 880 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 BCDIN3DQ7Z5W3 292 aaKnown RBP8.44□□□□□ -1.06
USP40-203ENST00000427112 SPRED1Q7Z699 444 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 MSRB3Q8IXL7 192 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 CADM3Q8N126 398 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 SORCS1Q8WY21 1168 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 SUSD3Q96L08 255 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 Q96MT0 163 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 CITED4Q96RK1 184 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 PHOX2BQ99453 314 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 NEURL2Q9BR09 285 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 SARDHQ9UL12 918 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 PSME4Q14997 1843 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 TAPBPO15533 448 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 COCHO43405 550 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 MYO1DO94832 1006 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 BMP4P12644 408 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms