RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 ACSL5Q9ULC5 683 aa12.46□□□□□ -0.41
LINC00339-202ENST00000416769 PLAGL1Q9UM63 463 aa12.46□□□□□ -0.41
LINC00339-202ENST00000416769 ICKQ9UPZ9 632 aa12.46□□□□□ -0.41
LINC00339-202ENST00000416769 B3GNT3Q9Y2A9 372 aa12.46□□□□□ -0.41
LINC00339-202ENST00000416769 PTRH2Q9Y3E5 179 aaKnown RBP12.46□□□□□ -0.41
LINC00339-202ENST00000416769 PCDHGB7Q9Y5F8 929 aa12.46□□□□□ -0.41
LINC00339-202ENST00000416769 NUP210LQ5VU65 1888 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 ERI2A8K979 691 aaKnown RBP12.45□□□□□ -0.42
LINC00339-202ENST00000416769 EFCAB8A8MWE9 144 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 E7EQ34 232 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 EPOP01588 193 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 UMODP07911 640 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 ITGAXP20702 1163 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 IVDP26440 423 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 ADRA1AP35348 466 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 HIF1AQ16665 826 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 DCAF10Q5QP82 559 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 ZDHHC20Q5W0Z9 365 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 KCTD11Q693B1 232 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 GALNT16Q8N428 558 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 FLVCR1-AS1Q8TAF5 88 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 HM13Q8TCT9 377 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 LINC00615Q96LM1 132 aaPredicted RBP12.45□□□□□ -0.42
LINC00339-202ENST00000416769 C5orf34Q96MH7 638 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 GBP5Q96PP8 586 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 SRPK1Q96SB4 655 aaKnown RBP12.45□□□□□ -0.42
LINC00339-202ENST00000416769 FSD1LQ9BXM9 530 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 SLC7A5P2Q9GIP4 190 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 RAB17Q9H0T7 212 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 RAB6BQ9NRW1 208 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 SLC22A11Q9NSA0 550 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 P4HTMQ9NXG6 502 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 ASIC3Q9UHC3 531 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 CRLS1Q9UJA2 301 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 SLC5A6Q9Y289 635 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 KLHL20Q9Y2M5 609 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 UTP11Q9Y3A2 253 aaKnown RBP12.45□□□□□ -0.42
LINC00339-202ENST00000416769 PCDHGA10Q9Y5H3 936 aa12.45□□□□□ -0.42
LINC00339-202ENST00000416769 C9J4A7 227 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 BHMG1C9JSJ3 638 aaPredicted RBP12.44□□□□□ -0.42
LINC00339-202ENST00000416769 SMAPO00193 183 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 E2F3O00716 465 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 DNALI1O14645 258 aaPredicted RBP12.44□□□□□ -0.42
LINC00339-202ENST00000416769 NDC80O14777 642 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 UGT2B7P16662 529 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 POU3F2P20265 443 aaPredicted RBP12.44□□□□□ -0.42
LINC00339-202ENST00000416769 TNFRSF8P28908 595 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 PEBP1P30086 187 aaKnown RBP12.44□□□□□ -0.42
LINC00339-202ENST00000416769 MAGEA6P43360 314 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 GLRBP48167 497 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 VPS41P49754 854 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 ZNF140P52738 457 aaPredicted RBP12.44□□□□□ -0.42
LINC00339-202ENST00000416769 RRADP55042 308 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 MRPS25P82663 173 aaKnown RBP12.44□□□□□ -0.42
LINC00339-202ENST00000416769 CDK16Q00536 496 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 MYBPC3Q14896 1274 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 TAF1AQ15573 450 aaPredicted RBP12.44□□□□□ -0.42
LINC00339-202ENST00000416769 ZRANB3Q5FWF4 1079 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 DUPD1Q68J44 220 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 AMIGO1Q86WK6 493 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 RAB43Q86YS6 212 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 TICAM1Q8IUC6 712 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 NXPE1Q8N323 547 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 CLDN19Q8N6F1 224 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 ZNF655Q8N720 491 aaPredicted RBP12.44□□□□□ -0.42
LINC00339-202ENST00000416769 AMER2Q8N7J2 671 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 C19orf47Q8N9M1 422 aaKnown RBP12.44□□□□□ -0.42
LINC00339-202ENST00000416769 BBOF1Q8ND07 529 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 OR5AR1Q8NGP9 310 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 ZFPM2Q8WW38 1151 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 OR2A14Q96R47 310 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 TRIM51Q9BSJ1 452 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 ILKAPQ9H0C8 392 aaPredicted RBP12.44□□□□□ -0.42
LINC00339-202ENST00000416769 EIF2B3Q9NR50 452 aaKnown RBP12.44□□□□□ -0.42
LINC00339-202ENST00000416769 CIDEBQ9UHD4 219 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 PRSS21Q9Y6M0 314 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 COLEC10Q9Y6Z7 277 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 ANKRD17O75179 2603 aaKnown RBP12.44□□□□□ -0.42
LINC00339-202ENST00000416769 MYO7BQ6PIF6 2116 aa12.44□□□□□ -0.42
LINC00339-202ENST00000416769 F8P00451 2351 aa12.43□□□□□ -0.42
LINC00339-202ENST00000416769 CCDC78A2IDD5 438 aa12.43□□□□□ -0.42
LINC00339-202ENST00000416769 ENO4A6NNW6 628 aa12.43□□□□□ -0.42
LINC00339-202ENST00000416769 AGAP14A8MT82 685 aa12.43□□□□□ -0.42
LINC00339-202ENST00000416769 E7EVH7 732 aa12.43□□□□□ -0.42
LINC00339-202ENST00000416769 OR2B3O76000 313 aa12.43□□□□□ -0.42
LINC00339-202ENST00000416769 SUN1O94901 812 aa12.43□□□□□ -0.42
LINC00339-202ENST00000416769 AP2A1O95782 977 aa12.43□□□□□ -0.42
LINC00339-202ENST00000416769 TPSB2P20231 275 aa12.43□□□□□ -0.42
LINC00339-202ENST00000416769 NDUFS1P28331 727 aa12.43□□□□□ -0.42
LINC00339-202ENST00000416769 BASP1P80723 227 aaKnown RBP12.43□□□□□ -0.42
LINC00339-202ENST00000416769 SLC7A5Q01650 507 aa12.43□□□□□ -0.42
LINC00339-202ENST00000416769 SRSF11Q05519 484 aaKnown RBP12.43□□□□□ -0.42
LINC00339-202ENST00000416769 BOP1Q14137 746 aaKnown RBP12.43□□□□□ -0.42
LINC00339-202ENST00000416769 BRD3Q15059 726 aa12.43□□□□□ -0.42
LINC00339-202ENST00000416769 TPSAB1Q15661 275 aa12.43□□□□□ -0.42
LINC00339-202ENST00000416769 DENND5AQ6IQ26 1287 aa12.43□□□□□ -0.42
LINC00339-202ENST00000416769 SPESP1Q6UW49 350 aa12.43□□□□□ -0.42
LINC00339-202ENST00000416769 RANBP10Q6VN20 620 aa12.43□□□□□ -0.42
LINC00339-202ENST00000416769 UNC5AQ6ZN44 842 aa12.43□□□□□ -0.42
LINC00339-202ENST00000416769 SHISA6Q6ZSJ9 500 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms