RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.37■□□□□ 0.53
SF3A1-202ENST00000411423 IZUMO3Q5VZ72 239 aa18.37■□□□□ 0.53
SF3A1-202ENST00000411423 ZNF385CQ66K41 422 aaPredicted RBP18.37■□□□□ 0.53
SF3A1-202ENST00000411423 MR1Q95460 341 aa18.37■□□□□ 0.53
SF3A1-202ENST00000411423 LRFN5Q96NI6 719 aa18.37■□□□□ 0.53
SF3A1-202ENST00000411423 TRIM51Q9BSJ1 452 aa18.37■□□□□ 0.53
SF3A1-202ENST00000411423 FANCEQ9HB96 536 aa18.37■□□□□ 0.53
SF3A1-202ENST00000411423 C20orf96Q9NUD7 363 aaPredicted RBP18.37■□□□□ 0.53
SF3A1-202ENST00000411423 INTS10Q9NVR2 710 aaKnown RBP18.37■□□□□ 0.53
SF3A1-202ENST00000411423 GEMIN8Q9NWZ8 242 aaKnown RBP18.37■□□□□ 0.53
SF3A1-202ENST00000411423 FAM169AQ9Y6X4 670 aa18.37■□□□□ 0.53
SF3A1-202ENST00000411423 A0A1W2PPV9 198 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 C21orf140B9A014 251 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 KPNA5O15131 536 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 TP73O15350 636 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 ZNF749O43361 778 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 NRP2O60462 931 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 HAUS5O94927 633 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 CHRM3P20309 590 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 FASNP49327 2511 aaKnown RBP18.36■□□□□ 0.53
SF3A1-202ENST00000411423 ITGA1P56199 1179 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 YBX1P67809 324 aaKnown RBP18.36■□□□□ 0.53
SF3A1-202ENST00000411423 TIAL1Q01085 375 aaKnown RBP eCLIP18.36■□□□□ 0.53
SF3A1-202ENST00000411423 THOC5Q13769 683 aaKnown RBP18.36■□□□□ 0.53
SF3A1-202ENST00000411423 FASTKQ14296 549 aaKnown RBP18.36■□□□□ 0.53
SF3A1-202ENST00000411423 LONRF1Q17RB8 773 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 FCRL6Q6DN72 434 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 FAM198BQ6UWH4 519 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 TMEM151BQ8IW70 566 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 ZBTB2Q8N680 514 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 SKA2Q8WVK7 121 aaPredicted RBP18.36■□□□□ 0.53
SF3A1-202ENST00000411423 PCSK5Q92824 1860 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 TCTN2Q96GX1 697 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 CATSPER2Q96P56 530 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 CHRNA10Q9GZZ6 450 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 ACTR5Q9H9F9 607 aaPredicted RBP18.36■□□□□ 0.53
SF3A1-202ENST00000411423 SYTL2Q9HCH5 934 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 SLC17A6Q9P2U8 582 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 KCND3Q9UK17 655 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 SAR1BQ9Y6B6 198 aa18.36■□□□□ 0.53
SF3A1-202ENST00000411423 FER1L5A0AVI2 2057 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 CDC14CA4D256 554 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 CTAGE9A4FU28 777 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 ARHGEF33A8MVX0 844 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 B8ZZF3 427 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 E7EQ34 232 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 H3BMM5 538 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 TTI1O43156 1089 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 CYP2A7P20853 494 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 PTPN4P29074 926 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 CCR10P46092 362 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 MC1RQ01726 317 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 KCNAB2Q13303 367 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 CUL1Q13616 776 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 CRYMQ14894 314 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 KLHL38Q2WGJ6 581 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 HSP90AA5PQ58FG0 334 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 HOOK3Q86VS8 718 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 SYTL1Q8IYJ3 562 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.35■□□□□ 0.53
SF3A1-202ENST00000411423 CLIP3Q96DZ5 547 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 IARS2Q9NSE4 1012 aaKnown RBP18.35■□□□□ 0.53
SF3A1-202ENST00000411423 SERTAD3Q9UJW9 196 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 FBXO5Q9UKT4 447 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 KCNMB2Q9Y691 235 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.35■□□□□ 0.533e-12■■■□□ 17.2
SF3A1-202ENST00000411423 COL6A6A6NMZ7 2263 aa18.35■□□□□ 0.53
SF3A1-202ENST00000411423 PYCARD-AS1I3L0S3 204 aa18.34■□□□□ 0.53
SF3A1-202ENST00000411423 RPN2P04844 631 aa18.34■□□□□ 0.53
SF3A1-202ENST00000411423 CBSLP0DN79 551 aa18.34■□□□□ 0.53
SF3A1-202ENST00000411423 ERVK-10P10266 1014 aa18.34■□□□□ 0.53
SF3A1-202ENST00000411423 PGAM1P18669 254 aa18.34■□□□□ 0.53
SF3A1-202ENST00000411423 GABRB3P28472 473 aa18.34■□□□□ 0.53
SF3A1-202ENST00000411423 ATP5DP30049 168 aa18.34■□□□□ 0.53
SF3A1-202ENST00000411423 CBSP35520 551 aa18.34■□□□□ 0.53
SF3A1-202ENST00000411423 MRPS25P82663 173 aaKnown RBP18.34■□□□□ 0.53
SF3A1-202ENST00000411423 HP1BP3Q5SSJ5 553 aaPredicted RBP18.34■□□□□ 0.53
SF3A1-202ENST00000411423 KCNMB4Q86W47 210 aa18.34■□□□□ 0.53
SF3A1-202ENST00000411423 ANP32BQ92688 251 aaKnown RBP18.34■□□□□ 0.53
SF3A1-202ENST00000411423 RAD51AP1Q96B01 352 aa18.34■□□□□ 0.53
SF3A1-202ENST00000411423 EBNA1BP2Q99848 306 aaKnown RBP18.34■□□□□ 0.53
SF3A1-202ENST00000411423 SLC39A10Q9ULF5 831 aa18.34■□□□□ 0.53
SF3A1-202ENST00000411423 FARSAQ9Y285 508 aaKnown RBP18.34■□□□□ 0.53
SF3A1-202ENST00000411423 ZNF462Q96JM2 2506 aa18.34■□□□□ 0.53
SF3A1-202ENST00000411423 SPENQ96T58 3664 aaKnown RBP18.33■□□□□ 0.53
SF3A1-202ENST00000411423 BAHCC1Q9P281 2608 aa18.33■□□□□ 0.53
SF3A1-202ENST00000411423 K7EM74 188 aa18.33■□□□□ 0.52
SF3A1-202ENST00000411423 KDM1AO60341 852 aa18.33■□□□□ 0.52
SF3A1-202ENST00000411423 PSIP1O75475 530 aaKnown RBP18.33■□□□□ 0.52
SF3A1-202ENST00000411423 ERGP11308 486 aa18.33■□□□□ 0.52
SF3A1-202ENST00000411423 GRIA3P42263 894 aa18.33■□□□□ 0.52
SF3A1-202ENST00000411423 GCGRP47871 477 aa18.33■□□□□ 0.52
SF3A1-202ENST00000411423 FOXL2P58012 376 aa18.33■□□□□ 0.52
SF3A1-202ENST00000411423 DR1Q01658 176 aa18.33■□□□□ 0.52
SF3A1-202ENST00000411423 BBS9Q3SYG4 887 aa18.33■□□□□ 0.52
SF3A1-202ENST00000411423 HIBCHQ6NVY1 386 aaPredicted RBP18.33■□□□□ 0.52
SF3A1-202ENST00000411423 CYHR1Q6ZMK1 362 aa18.33■□□□□ 0.52
SF3A1-202ENST00000411423 ZNF605Q86T29 641 aa18.33■□□□□ 0.52
SF3A1-202ENST00000411423 ENDOVQ8N8Q3 282 aaKnown RBP18.33■□□□□ 0.52
SF3A1-202ENST00000411423 C2CD4AQ8NCU7 369 aaPredicted RBP18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms