RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 CNIH3Q8TBE1 160 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 TCF25Q9BQ70 676 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 NUSAP1Q9BXS6 441 aaKnown RBP13.06□□□□□ -0.32
VPS54-203ENST00000409558 ASAH2Q9NR71 780 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 RAPGEFL1Q9UHV5 662 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 ACOX3O15254 700 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 CCL5P13501 91 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 COX7A2P14406 83 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 PSMD7P51665 324 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 RPS14P62263 151 aaKnown RBP13.06□□□□□ -0.32
VPS54-203ENST00000409558 TNK2Q07912 1038 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 GRIN2CQ14957 1233 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 ZXDCQ2QGD7 858 aaPredicted RBP13.06□□□□□ -0.32
VPS54-203ENST00000409558 C22orf39Q6P5X5 142 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 CERS6Q6ZMG9 384 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 CYP2U1Q7Z449 544 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 TRAPPC5Q8IUR0 188 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 TBC1D21Q8IYX1 336 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 GTF2H4Q92759 462 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 PEX13Q92968 403 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 TMEM175Q9BSA9 504 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 SLC52A3Q9NQ40 469 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 TRIOO75962 3097 aa13.06□□□□□ -0.32
VPS54-203ENST00000409558 OR56A5P0C7T3 313 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 TYRP14679 529 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 MSH3P20585 1137 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 PDHA2P29803 388 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 FMO3P31513 532 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 HKDC1Q2TB90 917 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 HSD11B1LQ7Z5J1 315 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 C11orf96Q7Z7L8 435 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 ELMOD1Q8N336 334 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 UBE2FQ969M7 185 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 ALG14Q96F25 216 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 PAWRQ96IZ0 340 aaKnown RBP13.05□□□□□ -0.32
VPS54-203ENST00000409558 RUBCNLQ9H714 662 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 ARMC1Q9NVT9 282 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 C1orf109Q9NX04 203 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 PTBP2Q9UKA9 531 aaKnown RBP13.05□□□□□ -0.32
VPS54-203ENST00000409558 OR51B4Q9Y5P0 310 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 CHD5Q8TDI0 1954 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 A0A087WXM4 84 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 SH3BP5O60239 455 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 CAPGP40121 348 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 CTSCP53634 463 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 ARSFP54793 590 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 CTBSQ01459 385 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 PWP1Q13610 501 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 CYBRD1Q53TN4 286 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 SULT1C3Q6IMI6 304 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 UTS2BQ765I0 119 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 GALNT7Q86SF2 657 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 HMGN2P46Q86SG4 172 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 C11orf74Q86VG3 221 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 SLC39A11Q8N1S5 342 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 SLAIN1Q8ND83 568 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 OR4K1Q8NGD4 311 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 OR5AK3PQ8NH89 298 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 C2orf15Q8WU43 125 aaKnown RBP13.05□□□□□ -0.32
VPS54-203ENST00000409558 SLC2A11Q9BYW1 496 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 ZIM2Q9NZV7 527 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 SLC25A13Q9UJS0 675 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 ATE1O95260 518 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 SERPIND1P05546 499 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 GPIP06744 558 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 ENO2P09104 434 aaPredicted RBP13.05□□□□□ -0.32
VPS54-203ENST00000409558 NUDT7P0C024 238 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 PFKLP17858 780 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 CD247P20963 164 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 PTGER1P34995 402 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 NSG1P42857 185 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 CLCN4P51793 760 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 CYP4F2P78329 520 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 PABPC1LQ4VXU2 614 aaKnown RBP13.05□□□□□ -0.32
VPS54-203ENST00000409558 ALG1LQ6GMV1 187 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 GRAMD4Q6IC98 578 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 ZUFSPQ96AP4 578 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 RHNO1Q9BSD3 238 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 BAG5Q9UL15 447 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 SLC8A2Q9UPR5 921 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 PATJQ8NI35 1801 aa13.05□□□□□ -0.32
VPS54-203ENST00000409558 A0A0G2JN53 185 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 TSPAN6O43657 245 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 FZD6O60353 706 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 NOL3O60936 208 aaKnown RBP13.04□□□□□ -0.32
VPS54-203ENST00000409558 MESP2Q0VG99 397 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 PDCD4Q53EL6 469 aaKnown RBP13.04□□□□□ -0.32
VPS54-203ENST00000409558 MPPE1Q53F39 396 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 C8orf82Q6P1X6 216 aaPredicted RBP13.04□□□□□ -0.32
VPS54-203ENST00000409558 TRMT11Q7Z4G4 463 aaKnown RBP13.04□□□□□ -0.32
VPS54-203ENST00000409558 TMEM179BQ7Z7N9 219 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 SNX29P2Q8IUI4 249 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 APLFQ8IW19 511 aaPredicted RBP13.04□□□□□ -0.32
VPS54-203ENST00000409558 OSCP1Q8WVF1 389 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 SH3KBP1Q96B97 665 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 TSEN34Q9BSV6 310 aaKnown RBP13.04□□□□□ -0.32
VPS54-203ENST00000409558 ANKRD60Q9BZ19 345 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 DOLKQ9UPQ8 538 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 THRBP10828 461 aa13.04□□□□□ -0.32
VPS54-203ENST00000409558 POU2F1P14859 743 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms