RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 AK4P27144 223 aaPredicted RBP13.09□□□□□ -0.31
LIMS1-204ENST00000409441 PIK3R1P27986 724 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 CCR7P32248 378 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 PI4KAP42356 2102 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 ATXN3P54252 364 aaPredicted RBP13.09□□□□□ -0.31
LIMS1-204ENST00000409441 ACTR3P61158 418 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 NAA20P61599 178 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 TIAL1Q01085 375 aaKnown RBP eCLIP13.09□□□□□ -0.31
LIMS1-204ENST00000409441 GSTM4Q03013 218 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 ILF3Q12906 894 aaKnown RBP eCLIP13.09□□□□□ -0.31
LIMS1-204ENST00000409441 PDAP1Q13442 181 aaKnown RBP13.09□□□□□ -0.31
LIMS1-204ENST00000409441 CSRP2Q16527 193 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 CMPK2Q5EBM0 449 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 NRROSQ86YC3 692 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 POU5F2Q8N7G0 328 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 RP9Q8TA86 221 aaKnown RBP13.09□□□□□ -0.31
LIMS1-204ENST00000409441 LKAAEAR1Q8TD35 194 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 LMX1AQ8TE12 382 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 WDR60Q8WVS4 1066 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 ELMO1Q92556 727 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 KCNJ9Q92806 393 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 LRRC61Q9BV99 259 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 WDR55Q9H6Y2 383 aaPredicted RBP13.09□□□□□ -0.31
LIMS1-204ENST00000409441 SARS2Q9NP81 518 aaKnown RBP13.09□□□□□ -0.31
LIMS1-204ENST00000409441 SPATS2LQ9NUQ6 558 aaKnown RBP13.09□□□□□ -0.31
LIMS1-204ENST00000409441 TAS2R13Q9NYV9 303 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 STX18Q9P2W9 335 aaKnown RBP13.09□□□□□ -0.31
LIMS1-204ENST00000409441 FAM8A1Q9UBU6 413 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 SLC7A8Q9UHI5 535 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 KCNK6Q9Y257 313 aa13.09□□□□□ -0.31
LIMS1-204ENST00000409441 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.09□□□□□ -0.31
LIMS1-204ENST00000409441 CACNA1EQ15878 2313 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 LNP1A1A4G5 178 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 KLHL33A6NCF5 533 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 NEMP2A6NFY4 417 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 SDHDO14521 159 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 KPNA5O15131 536 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 FKBP6O75344 327 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 VPS26AO75436 327 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 CER1O95813 267 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 CELA2BP08218 269 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-204ENST00000409441 ITGAXP20702 1163 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 DGKAP23743 735 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 AOAHP28039 575 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 EPHA3P29320 983 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 CLCN7P51798 805 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 INHBCP55103 352 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 ATP6V0D1P61421 351 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 SLC25A3Q00325 362 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 NFE2L1Q14494 772 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 RCN1Q15293 331 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 ELOCQ15369 112 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 ZNF678Q5SXM1 525 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 METRNLQ641Q3 311 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 TLDC1Q6P9B6 456 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 PGM2L1Q6PCE3 622 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 FAM83HQ6ZRV2 1179 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-204ENST00000409441 RIPOR1Q6ZS17 1223 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 RAB44Q7Z6P3 723 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-204ENST00000409441 TAF8Q7Z7C8 310 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 PIM3Q86V86 326 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 SLC25A45Q8N413 288 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 ZNF548Q8NEK5 533 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-204ENST00000409441 CEP70Q8NHQ1 597 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 MOCOSQ96EN8 888 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 RSRC1Q96IZ7 334 aaKnown RBP13.08□□□□□ -0.32
LIMS1-204ENST00000409441 GPR21Q99679 349 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 GSDMCQ9BYG8 508 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 UNKQ9C0B0 810 aaKnown RBP13.08□□□□□ -0.32
LIMS1-204ENST00000409441 DERL2Q9GZP9 239 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 GSTO2Q9H4Y5 243 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 ALG9Q9H6U8 611 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 MEAF6Q9HAF1 191 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 LATS2Q9NRM7 1088 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 UCKL1Q9NWZ5 548 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 NDE1Q9NXR1 346 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 ANGPTL2Q9UKU9 493 aa13.08□□□□□ -0.32
LIMS1-204ENST00000409441 H0Y3Z8 333 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 YY2O15391 372 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 AQP9O43315 295 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 KRT36O76013 467 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 IDSP22304 550 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 TGM1P22735 817 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 ACTR1BP42025 376 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 CLCNKAP51800 687 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 ACTR1AP61163 376 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 HERVK_113P63132 956 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 SLC34A1Q06495 639 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 DMPKQ09013 629 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 HSPA14Q0VDF9 509 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 CUL3Q13618 768 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 BOP1Q14137 746 aaKnown RBP13.07□□□□□ -0.32
LIMS1-204ENST00000409441 PDCD2Q16342 344 aaPredicted RBP13.07□□□□□ -0.32
LIMS1-204ENST00000409441 ZNF658BQ4V348 819 aaPredicted RBP13.07□□□□□ -0.32
LIMS1-204ENST00000409441 UGT3A1Q6NUS8 523 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 AAGABQ6PD74 315 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 SLC30A9Q6PML9 568 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 C16orf89Q6UX73 402 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 CUZD1Q86UP6 607 aa13.07□□□□□ -0.32
LIMS1-204ENST00000409441 MYLK4Q86YV6 388 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms