RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 C2orf73Q8N5S3 287 aaPredicted RBP17.53■□□□□ 0.4
SDC1-203ENST00000403076 PPFIBP2Q8ND30 876 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 OR4E2Q8NGC2 313 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 ZNF480Q8WV37 535 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 MED8Q96G25 268 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 EDEM2Q9BV94 578 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 SRMSQ9H3Y6 488 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 ANGPTL3Q9Y5C1 460 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 MUC6Q6W4X9 2439 aa17.53■□□□□ 0.4
SDC1-203ENST00000403076 RHPN2P1A8MT19 583 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 SIGLEC6O43699 453 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 STK16O75716 305 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 BGNP21810 368 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 FASLGP48023 281 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 RAB28P51157 221 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 NAGLUP54802 743 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 GYS2P54840 703 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 DNAJB13P59910 316 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 HERVK_113P63132 956 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 ARHGAP19Q14CB8 494 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 PTCHD3Q3KNS1 767 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 INAVAQ3KP66 663 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 AASDHQ4L235 1098 aaPredicted RBP17.52■□□□□ 0.4
SDC1-203ENST00000403076 ANKS6Q68DC2 871 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 ZCCHC23Q6ZST2 131 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 ZNF761Q86XN6 746 aaPredicted RBP17.52■□□□□ 0.4
SDC1-203ENST00000403076 SLC35F3Q8IY50 421 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 LMNTD1Q8N9Z9 388 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 PYCR2Q96C36 320 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 SLC38A3Q99624 504 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 NRTNQ99748 197 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 ERVK-6Q9BXR3 956 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.52■□□□□ 0.4
SDC1-203ENST00000403076 CD244Q9BZW8 370 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 TMEM9BQ9NQ34 198 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 ACSS2Q9NR19 701 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 DNAAF2Q9NVR5 837 aaKnown RBP17.52■□□□□ 0.4
SDC1-203ENST00000403076 OGFRQ9NZT2 677 aa17.52■□□□□ 0.4
SDC1-203ENST00000403076 LRRC14BA6NHZ5 514 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 PPM1DO15297 605 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 SUPT7LO94864 414 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 WDR47O94967 919 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 PKLRP30613 574 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 SHMT2P34897 504 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 GDF5P43026 501 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 GUCY1A3Q02108 690 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 PCBP2Q15366 365 aaKnown RBP eCLIP17.52■□□□□ 0.39
SDC1-203ENST00000403076 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.52■□□□□ 0.39
SDC1-203ENST00000403076 THEMIS2Q5TEJ8 643 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 CAPN13Q6MZZ7 669 aaPredicted RBP17.52■□□□□ 0.39
SDC1-203ENST00000403076 AMIGO1Q86WK6 493 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 C17orf82Q86X59 251 aaPredicted RBP17.52■□□□□ 0.39
SDC1-203ENST00000403076 APOLD1Q96LR9 279 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 TMEM237Q96Q45 408 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 TMEM79Q9BSE2 394 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 GATA5Q9BWX5 397 aaPredicted RBP17.52■□□□□ 0.39
SDC1-203ENST00000403076 LRIT1Q9P2V4 623 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 OPTCQ9UBM4 332 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 PADI4Q9UM07 663 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 ICKQ9UPZ9 632 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 PCDHGB2Q9Y5G2 931 aa17.52■□□□□ 0.39
SDC1-203ENST00000403076 H2AFYO75367 372 aaKnown RBP17.51■□□□□ 0.39
SDC1-203ENST00000403076 FGF3P11487 239 aaPredicted RBP17.51■□□□□ 0.39
SDC1-203ENST00000403076 MYF5P13349 255 aa17.51■□□□□ 0.39
SDC1-203ENST00000403076 GGT5P36269 586 aa17.51■□□□□ 0.39
SDC1-203ENST00000403076 MDH1P40925 334 aaKnown RBP17.51■□□□□ 0.39
SDC1-203ENST00000403076 FASTKQ14296 549 aaKnown RBP17.51■□□□□ 0.39
SDC1-203ENST00000403076 NR0B2Q15466 257 aa17.51■□□□□ 0.39
SDC1-203ENST00000403076 CYP2A13Q16696 494 aa17.51■□□□□ 0.39
SDC1-203ENST00000403076 ZNF678Q5SXM1 525 aa17.51■□□□□ 0.39
SDC1-203ENST00000403076 SUSD1Q6UWL2 747 aa17.51■□□□□ 0.39
SDC1-203ENST00000403076 SNX31Q8N9S9 440 aa17.51■□□□□ 0.39
SDC1-203ENST00000403076 OR2L8Q8NGY9 312 aa17.51■□□□□ 0.39
SDC1-203ENST00000403076 LRRC8CQ8TDW0 803 aa17.51■□□□□ 0.39
SDC1-203ENST00000403076 SETD7Q8WTS6 366 aaKnown RBP17.51■□□□□ 0.39
SDC1-203ENST00000403076 UBTD2Q8WUN7 234 aa17.51■□□□□ 0.39
SDC1-203ENST00000403076 SMPDL3AQ92484 453 aa17.51■□□□□ 0.39
SDC1-203ENST00000403076 L3HYPDHQ96EM0 354 aa17.51■□□□□ 0.39
SDC1-203ENST00000403076 MANSC1Q9H8J5 431 aa17.51■□□□□ 0.39
SDC1-203ENST00000403076 CCDC177Q9NQR7 707 aaPredicted RBP17.51■□□□□ 0.39
SDC1-203ENST00000403076 E7ENX8 843 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 SERPINE1P05121 402 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 DAB2P98082 770 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 TAP2Q03519 686 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 STX3Q13277 289 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 PDK4Q16654 411 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 UNC50Q53HI1 259 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 ATG16L1Q676U5 607 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 TTC19Q6DKK2 380 aaPredicted RBP17.5■□□□□ 0.39
SDC1-203ENST00000403076 PRR23CQ6ZRP0 262 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 RPS27LQ71UM5 84 aaKnown RBP17.5■□□□□ 0.39
SDC1-203ENST00000403076 TEX9Q8N6V9 391 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 OR56A3Q8NH54 315 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 OR10G6Q8NH81 332 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 RHBDD1Q8TEB9 315 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 CKAP2Q8WWK9 683 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 ZNF75CPQ92670 426 aaPredicted RBP17.5■□□□□ 0.39
SDC1-203ENST00000403076 MOCOSQ96EN8 888 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 MENTQ9BUN1 341 aa17.5■□□□□ 0.39
SDC1-203ENST00000403076 TBC1D10AQ9BXI6 508 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms