RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 LRIF1Q5T3J3 769 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 ATXN7L2Q5T6C5 722 aaPredicted RBP12.41□□□□□ -0.42
SHMT1-205ENST00000395684 SHQ1Q6PI26 577 aaKnown RBP12.41□□□□□ -0.42
SHMT1-205ENST00000395684 CERS6Q6ZMG9 384 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 NCCRP1Q6ZVX7 275 aaPredicted RBP12.41□□□□□ -0.42
SHMT1-205ENST00000395684 RORBQ92753 470 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 NTMT1Q9BV86 223 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 ACPTQ9BZG2 426 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 DUSP21Q9H596 190 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 RETREG1Q9H6L5 497 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 ATP13A3Q9H7F0 1226 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 ASIC5Q9NY37 505 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 LHX3Q9UBR4 397 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 ABCG2Q9UNQ0 655 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 ORC6Q9Y5N6 252 aa12.41□□□□□ -0.42
SHMT1-205ENST00000395684 COCHO43405 550 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 RECQL5O94762 991 aaPredicted RBP12.4□□□□□ -0.42
SHMT1-205ENST00000395684 EBLN1P0CF75 366 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 HOXB9P17482 250 aaPredicted RBP12.4□□□□□ -0.42
SHMT1-205ENST00000395684 IL1RNP18510 177 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 MAGEA2P43356 314 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 RGS4P49798 205 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 SLC35A2P78381 396 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 FAM189BP81408 668 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 ACOX1Q15067 660 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 CPSF6Q16630 551 aaKnown RBP eCLIP12.4□□□□□ -0.42
SHMT1-205ENST00000395684 RFX4Q33E94 735 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 RNF165Q6ZSG1 346 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 ZDHHC21Q8IVQ6 265 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 SLC22A15Q8IZD6 547 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 ERLEC1Q96DZ1 483 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 YIPF6Q96EC8 236 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 WDR12Q9GZL7 423 aaKnown RBP12.4□□□□□ -0.42
SHMT1-205ENST00000395684 KCNH6Q9H252 994 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 RIBC2Q9H4K1 309 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 ASB8Q9H765 288 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 FCF1Q9Y324 198 aaKnown RBP12.4□□□□□ -0.42
SHMT1-205ENST00000395684 PLXNA4Q9HCM2 1894 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 A0A1B0GVM2 712 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 GOLGA8CPA6NN73 597 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 STC2O76061 302 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 WDR47O94967 919 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 NADKO95544 446 aaPredicted RBP12.4□□□□□ -0.42
SHMT1-205ENST00000395684 EPB42P16452 691 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 EPORP19235 508 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 RPS3P23396 243 aaKnown RBP eCLIP12.4□□□□□ -0.42
SHMT1-205ENST00000395684 DGKAP23743 735 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 TACR1P25103 407 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 MZF1P28698 734 aaPredicted RBP12.4□□□□□ -0.42
SHMT1-205ENST00000395684 MASP1P48740 699 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 HUNKP57058 714 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 RPS14P62263 151 aaKnown RBP12.4□□□□□ -0.42
SHMT1-205ENST00000395684 IL1RL1Q01638 556 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 SMN1Q16637 294 aaKnown RBP12.4□□□□□ -0.42
SHMT1-205ENST00000395684 PAGE2BQ5JRK9 111 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 GPRC6AQ5T6X5 926 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 MFSD4AQ8N468 514 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 GLMNQ92990 594 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 ULK4Q96C45 1275 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 REXO5Q96IC2 774 aaKnown RBP12.4□□□□□ -0.42
SHMT1-205ENST00000395684 PCDH12Q9NPG4 1184 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 TRPS1Q9UHF7 1281 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 MAN2B2Q9Y2E5 1009 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 AP3M1Q9Y2T2 418 aa12.4□□□□□ -0.42
SHMT1-205ENST00000395684 A0A096LPI6 279 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 M0R3G1 203 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 SLC22A1O15245 554 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 DIRAS1O95057 198 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 BMP4P12644 408 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 JUNDP17535 347 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 EPHA2P29317 976 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 RPS3AP61247 264 aaKnown RBP12.39□□□□□ -0.43
SHMT1-205ENST00000395684 DGCR6Q14129 220 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 TMEM236Q5W0B7 351 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 TAS1R1Q7RTX1 841 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 OR6K2Q8NGY2 324 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 PIH1D2Q8WWB5 315 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 ITPKCQ96DU7 683 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 CEP295NLQ96MC4 621 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 ZNF641Q96N77 438 aaPredicted RBP12.39□□□□□ -0.43
SHMT1-205ENST00000395684 TSSK3Q96PN8 268 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 ZNF300Q96RE9 604 aaPredicted RBP12.39□□□□□ -0.43
SHMT1-205ENST00000395684 BTBD2Q9BX70 525 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 PARVBQ9HBI1 364 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 IL26Q9NPH9 171 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 MARCH5Q9NX47 278 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 PPT2Q9UMR5 302 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 TRIM17Q9Y577 477 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 NT5C1B-RDH14C9J2C7 533 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 SCAMP3O14828 347 aaKnown RBP12.39□□□□□ -0.43
SHMT1-205ENST00000395684 SEPT4O43236 478 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 COQ9O75208 318 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 ZNF682O95780 498 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 PDYNP01213 254 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 IRF1P10914 325 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 CKBP12277 381 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 S100A3P33764 101 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 NEK2P51955 445 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 CLDN8P56748 225 aa12.39□□□□□ -0.43
SHMT1-205ENST00000395684 NCS1P62166 190 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms