RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.95□□□□□ -0.82
VPS53-202ENST00000389040 OR5K4A6NMS3 321 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 C4orf47A7E2U8 309 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 SDHDO14521 159 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 SLC30A4O14863 429 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 SKAP2O75563 359 aaPredicted RBP9.95□□□□□ -0.82
VPS53-202ENST00000389040 SUPT7LO94864 414 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 ANXA6P08133 673 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 OR56A5P0C7T3 313 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 CDK4P11802 303 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 ZNF8P17098 575 aaPredicted RBP9.95□□□□□ -0.82
VPS53-202ENST00000389040 CSRP1P21291 193 aaKnown RBP9.95□□□□□ -0.82
VPS53-202ENST00000389040 PTDSS1P48651 473 aaKnown RBP9.95□□□□□ -0.82
VPS53-202ENST00000389040 CDKN1CP49918 316 aaPredicted RBP9.95□□□□□ -0.82
VPS53-202ENST00000389040 BTKQ06187 659 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 C1orf146Q5VVC0 180 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 TMEM198Q66K66 360 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 PSAPL1Q6NUJ1 521 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 WASH2PQ6VEQ5 465 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 RPS27LQ71UM5 84 aaKnown RBP9.95□□□□□ -0.82
VPS53-202ENST00000389040 PIANPQ8IYJ0 282 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 KIAA2013Q8IYS2 634 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 SLC25A45Q8N413 288 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 OR4C6Q8NH72 309 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 RP9Q8TA86 221 aaKnown RBP9.95□□□□□ -0.82
VPS53-202ENST00000389040 ACTRT2Q8TDY3 377 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 EXT2Q93063 718 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 ANKRD27Q96NW4 1050 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 CATSPER2Q96P56 530 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 LRRC61Q9BV99 259 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 DERL2Q9GZP9 239 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 SLC32A1Q9H598 525 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 MEAF6Q9HAF1 191 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 WASH6PQ9NQA3 447 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 STOML1Q9UBI4 398 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 ZNHIT2Q9UHR6 403 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 MCM8Q9UJA3 840 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 FIS1Q9Y3D6 152 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 PCDHB1Q9Y5F3 818 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 CEP192Q8TEP8 1941 aa9.95□□□□□ -0.82
VPS53-202ENST00000389040 CACNA1EQ15878 2313 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 UBXN8O00124 270 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 UBFD1O14562 309 aaKnown RBP9.94□□□□□ -0.82
VPS53-202ENST00000389040 PRMT5O14744 637 aaPredicted RBP9.94□□□□□ -0.82
VPS53-202ENST00000389040 KPNA5O15131 536 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 CCNT2O60583 730 aaKnown RBP9.94□□□□□ -0.82
VPS53-202ENST00000389040 FTH1P02794 183 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 FUCA1P04066 466 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 CD59P13987 128 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 RPS3P23396 243 aaKnown RBP eCLIP9.94□□□□□ -0.82
VPS53-202ENST00000389040 GNPDA1P46926 289 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 RPIAP49247 311 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 ATP6V0D1P61421 351 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 SLC34A1Q06495 639 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 HERC3Q15034 1050 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 ZRSR2Q15696 482 aaKnown RBP9.94□□□□□ -0.82
VPS53-202ENST00000389040 UNC50Q53HI1 259 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 ZCCHC8Q6NZY4 707 aaKnown RBP9.94□□□□□ -0.82
VPS53-202ENST00000389040 PAQR3Q6TCH7 311 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 RD3Q7Z3Z2 195 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 RAB44Q7Z6P3 723 aaPredicted RBP9.94□□□□□ -0.82
VPS53-202ENST00000389040 AMZ2Q86W34 360 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 SNX32Q86XE0 403 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 DEFB107AQ8IZN7 70 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 PTGR2Q8N8N7 351 aaPredicted RBP9.94□□□□□ -0.82
VPS53-202ENST00000389040 RASGEF1AQ8N9B8 481 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 OR2L2Q8NH16 312 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 CEP70Q8NHQ1 597 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 LMX1AQ8TE12 382 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 KIAA1191Q96A73 305 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 PDXPQ96GD0 296 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 BIRC8Q96P09 236 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 ATOH8Q96SQ7 321 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 GPR21Q99679 349 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 CLPBQ9H078 707 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 IL21RQ9HBE5 538 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 ZBTB26Q9HCK0 441 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 TNFRSF12AQ9NP84 129 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 RXFP3Q9NSD7 469 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 KLHL42Q9P2K6 505 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 STX18Q9P2W9 335 aaKnown RBP9.94□□□□□ -0.82
VPS53-202ENST00000389040 MOSPD1Q9UJG1 213 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 CDV3Q9UKY7 258 aaKnown RBP9.94□□□□□ -0.82
VPS53-202ENST00000389040 PCOLCE2Q9UKZ9 415 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 ACSL5Q9ULC5 683 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 G3BP2Q9UN86 482 aaKnown RBP9.94□□□□□ -0.82
VPS53-202ENST00000389040 DOLKQ9UPQ8 538 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 GPSM3Q9Y4H4 160 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 TRAF6Q9Y4K3 522 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 COPG1Q9Y678 874 aaKnown RBP9.94□□□□□ -0.82
VPS53-202ENST00000389040 PCDH15Q96QU1 1955 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 MGAT4DA6NG13 374 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 TM4SF5O14894 197 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 OR1I1O60431 355 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 KERAO60938 352 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 VPS26AO75436 327 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 ESR1P03372 595 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 MTHFD2P13995 350 aa9.94□□□□□ -0.82
VPS53-202ENST00000389040 PKMP14618 531 aaKnown RBP9.94□□□□□ -0.82
VPS53-202ENST00000389040 CD1EP15812 388 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms