RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 LAMP2P13473 410 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 KIR3DL1P43629 444 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 ENTPD1P49961 510 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 FGFBP1Q14512 234 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 SLC17A1Q14916 467 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 UBXN2BQ14CS0 331 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 UGT8Q16880 541 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 MPPE1Q53F39 396 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 KDM1BQ8NB78 822 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 TCF25Q9BQ70 676 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 ZNF670Q9BS34 389 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 SMCO4Q9NRQ5 59 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 FBXL3Q9UKT7 428 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 ASB4Q9Y574 426 aa8.59□□□□□ -1.04
LIG3-202ENST00000378526 A8MV72 311 aaPredicted RBP8.58□□□□□ -1.04
LIG3-202ENST00000378526 TP73O15350 636 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 PRAF2O60831 178 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 MT-ND2P03891 347 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 PAEPP09466 180 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 XKP51811 444 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 EEF1A2Q05639 463 aaKnown RBP8.58□□□□□ -1.04
LIG3-202ENST00000378526 ETFRF1Q6IPR1 90 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 TMPRSS7Q7RTY8 843 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 FITM2Q8N6M3 262 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 PTERQ96BW5 349 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 PRDM9Q9NQV7 894 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 RBM22Q9NW64 420 aaKnown RBP eCLIP8.58□□□□□ -1.042e-8■■■■■ 35.1
LIG3-202ENST00000378526 KIF25Q9UIL4 384 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 FUOMA2VDF0 154 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 CYP27B1O15528 508 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 ITM2AO43736 263 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 JCHAINP01591 159 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 ZNF182P17025 639 aaPredicted RBP8.58□□□□□ -1.04
LIG3-202ENST00000378526 RELAQ04206 551 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 LSAMPQ13449 338 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 DAG1Q14118 895 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 VAMP3Q15836 100 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 XKR3Q5GH77 459 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 PNCKQ6P2M8 343 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 ALDH16A1Q8IZ83 802 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 RNF149Q8NC42 400 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 ACOT11Q8WXI4 607 aaPredicted RBP8.58□□□□□ -1.04
LIG3-202ENST00000378526 LPGAT1Q92604 370 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 PTCHD1Q96NR3 888 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 MYOCQ99972 504 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 NMUR2Q9GZQ4 415 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 PCDHGA1Q9Y5H4 931 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 CDK12Q9NYV4 1490 aaPredicted RBP8.58□□□□□ -1.04
LIG3-202ENST00000378526 TCP10L2B9ZVM9 353 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 CDRT1O95170 752 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 HOXD8P13378 290 aaPredicted RBP8.58□□□□□ -1.04
LIG3-202ENST00000378526 ANTXR2P58335 489 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 PSTKQ8IV42 348 aaKnown RBP8.58□□□□□ -1.04
LIG3-202ENST00000378526 HAS2Q92819 552 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 SNAPC3Q92966 411 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 MAST1Q9Y2H9 1570 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 GRIN2BQ13224 1484 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 USP17L3A6NCW0 530 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 USP17L4A6NCW7 530 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 URODP06132 367 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 HLA-FP30511 346 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 NRIP1P48552 1158 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 MC1RQ01726 317 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 ARHGAP11BQ3KRB8 267 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 TLDC1Q6P9B6 456 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 UGT2A3Q6UWM9 527 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 HIST2H3AQ71DI3 136 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 USP17L1Q7RTZ2 530 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 TRABD2AQ86V40 505 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 ZNF584Q8IVC4 421 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 DAGLBQ8NCG7 672 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 COL26A1Q96A83 441 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 EYA1Q99502 592 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 CDC6Q99741 560 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 TLR10Q9BXR5 811 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 RAVER2Q9HCJ3 691 aaKnown RBP8.58□□□□□ -1.04
LIG3-202ENST00000378526 FOXN1O15353 648 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 RBBP9O75884 186 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 CALCAP01258 141 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 DNM1P34Q6PK57 102 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 SHKBP1Q8TBC3 707 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 MAPKAP1Q9BPZ7 522 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 C1orf21Q9H246 121 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 ADAMTS10Q9H324 1103 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 SEMA6CQ9H3T2 930 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 COL20A1Q9P218 1284 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 ZNF510Q9Y2H8 683 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 PCDHB5Q9Y5E4 795 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 CD109Q6YHK3 1445 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 ERVV-2B6SEH9 535 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 PPEF1O14829 653 aaPredicted RBP8.58□□□□□ -1.04
LIG3-202ENST00000378526 ZNF207O43670 478 aaKnown RBP8.58□□□□□ -1.04
LIG3-202ENST00000378526 BCKDHAP12694 445 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 ACO1P21399 889 aaKnown RBP8.58□□□□□ -1.04
LIG3-202ENST00000378526 ZNF155Q12901 538 aaPredicted RBP8.58□□□□□ -1.04
LIG3-202ENST00000378526 BOP1Q14137 746 aaKnown RBP8.58□□□□□ -1.04
LIG3-202ENST00000378526 NEPROQ6NW34 567 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 SCML4Q8N228 414 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 PGBD3Q8N328 593 aa8.58□□□□□ -1.04
LIG3-202ENST00000378526 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.58□□□□□ -1.046e-8■■■■■ 29
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms