RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ZNF711Q9Y462 761 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 PCDHGA2Q9Y5H1 932 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 COMMD10Q9Y6G5 202 aa13.95□□□□□ -0.18
HMGA1-203ENST00000374116 A0A1W2PQU0 124 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 STX7O15400 261 aaKnown RBP13.94□□□□□ -0.18
HMGA1-203ENST00000374116 RNGTTO60942 597 aaKnown RBP13.94□□□□□ -0.18
HMGA1-203ENST00000374116 LILRB5O75023 590 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 CDK14O94921 469 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 CLDN7O95471 211 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 IGHV4-34P06331 123 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 SNRPB2P08579 225 aaKnown RBP13.94□□□□□ -0.18
HMGA1-203ENST00000374116 PKMP14618 531 aaKnown RBP13.94□□□□□ -0.18
HMGA1-203ENST00000374116 OXTRP30559 389 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 MC4RP32245 332 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 MMP12P39900 470 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 DHPSP49366 369 aaPredicted RBP13.94□□□□□ -0.18
HMGA1-203ENST00000374116 NUBP1P53384 320 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 RALGDSQ12967 914 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 CEACAM7Q14002 265 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 FLOT2Q14254 428 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 FGL2Q14314 439 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 CDKN3Q16667 212 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 PPP1R3AQ16821 1122 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 PLK5Q496M5 336 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 AGKQ53H12 422 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 PSAPL1Q6NUJ1 521 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 CHERPQ8IWX8 916 aaKnown RBP13.94□□□□□ -0.18
HMGA1-203ENST00000374116 BORCS5Q969J3 196 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 SLC25A23Q9BV35 468 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 MID1IP1Q9NPA3 183 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 TBC1D23Q9NUY8 699 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 A0A0J9YYE9 177 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 TRIM64CA6NLI5 447 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 SUPT3HB4E1H0 165 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 AZIN1O14977 448 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 SLC31A1O15431 190 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 BCAS2O75934 225 aaPredicted RBP13.94□□□□□ -0.18
HMGA1-203ENST00000374116 PAK4O96013 591 aaPredicted RBP13.94□□□□□ -0.18
HMGA1-203ENST00000374116 TRBC1P01850 177 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 XRCC1P18887 633 aaPredicted RBP13.94□□□□□ -0.18
HMGA1-203ENST00000374116 TSPAN8P19075 237 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 ITPKAP23677 461 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 CDH13P55290 713 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 PKNOX1P55347 436 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 STX1BP61266 288 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 POLR2LP62875 67 aaKnown RBP13.94□□□□□ -0.18
HMGA1-203ENST00000374116 TXNL4AP83876 142 aaKnown RBP13.94□□□□□ -0.18
HMGA1-203ENST00000374116 KANK2Q63ZY3 851 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 ERAP2Q6P179 960 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 CYHR1Q6ZMK1 362 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 FBXO39Q8N4B4 442 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 SCAIQ8N9R8 606 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 OR2T34Q8NGX1 318 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 HMGCLL1Q8TB92 370 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 GIPC3Q8TF64 312 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 DLG3Q92796 817 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 SCRN2Q96FV2 425 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 GPR21Q99679 349 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 MIR1-1HGQ9H1L0 117 aa13.94□□□□□ -0.18
HMGA1-203ENST00000374116 EIF2B4Q9UI10 523 aaKnown RBP13.94□□□□□ -0.18
HMGA1-203ENST00000374116 GPR179Q6PRD1 2367 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 LRRC72A6NJI9 287 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 STX16-NPEPL1H3BU86 382 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 TRIM38O00635 465 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 FBP2O00757 339 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 STX16O14662 325 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 WNT9AO14904 365 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 SIX3O95343 332 aaPredicted RBP13.93□□□□□ -0.18
HMGA1-203ENST00000374116 ATP6V1B1P15313 513 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 DPP6P42658 865 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 PSME3P61289 254 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 LRP8Q14114 963 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 TGFBIQ15582 683 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 CLPPQ16740 277 aaPredicted RBP13.93□□□□□ -0.18
HMGA1-203ENST00000374116 LRRC66Q68CR7 880 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 CRTC1Q6UUV9 634 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 LAYNQ6UX15 382 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 HACD2Q6Y1H2 254 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 LYSMD3Q7Z3D4 306 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 RGL4Q8IZJ4 473 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 HM13Q8TCT9 377 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 HCAR2Q8TDS4 363 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 CXorf40AQ8TE69 158 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 BPIFA1Q9NP55 256 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 TMEM74BQ9NUR3 256 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 CD84Q9UIB8 345 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 PACSIN3Q9UKS6 424 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 TDRKHQ9Y2W6 561 aaKnown RBP13.93□□□□□ -0.18
HMGA1-203ENST00000374116 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.93□□□□□ -0.18
HMGA1-203ENST00000374116 FAM32AQ9Y421 112 aaKnown RBP13.93□□□□□ -0.18
HMGA1-203ENST00000374116 PCDHGA7Q9Y5G6 932 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 DNAJC15Q9Y5T4 150 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 PLXNA2O75051 1894 aa13.93□□□□□ -0.18
HMGA1-203ENST00000374116 C1orf232A0A0U1RR37 186 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 FUOMA2VDF0 154 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 GAPDHSO14556 408 aaPredicted RBP13.92□□□□□ -0.18
HMGA1-203ENST00000374116 KLK8O60259 260 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 VPS4BO75351 444 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 BMP10O95393 424 aa13.92□□□□□ -0.18
HMGA1-203ENST00000374116 ELFN1P0C7U0 828 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms