RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 LINGO2Q7L985 606 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 KLHL6Q8WZ60 621 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 SLC45A3Q96JT2 553 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 MIR1-1HGQ9H1L0 117 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 CCDC177Q9NQR7 707 aaPredicted RBP19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 SLC2A6Q9UGQ3 507 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 PCDHGA11Q9Y5H2 935 aa19.14■□□□□ 0.65
CCDC88B-202ENST00000356786 SCN2BO60939 215 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 CLCN4P51793 760 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 SREBF2Q12772 1141 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 PTGES3Q15185 160 aaKnown RBP19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 UBAP2Q5T6F2 1119 aaKnown RBP19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 TNFAIP8L2Q6P589 184 aaPredicted RBP19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 PIM3Q86V86 326 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 CCDC28AQ8IWP9 274 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 GHDCQ8N2G8 530 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 TRUB1Q8WWH5 349 aaKnown RBP19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 ELAC1Q9H777 363 aaKnown RBP19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 TBC1D3BA6NDS4 549 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 GTPBP1O00178 669 aaKnown RBP19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 CREG1O75629 220 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 PRPS1L1P21108 318 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 CPN2P22792 545 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 TBRG1Q3YBR2 411 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 CRB2Q5IJ48 1285 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 CLEC4DQ8WXI8 215 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 DDX1Q92499 740 aaKnown RBP19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 URADA6NGE7 173 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 PLOD2O00469 737 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 IL1BP01584 269 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 ENGP17813 658 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 MPPE1Q53F39 396 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 GJD3Q8N144 294 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 TRPM4Q8TD43 1214 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 CDRT1O95170 752 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 TCEAL1Q15170 157 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 OGFRL1Q5TC84 451 aaPredicted RBP19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 CYP2U1Q7Z449 544 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 BPIFB1Q8TDL5 484 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 TMEM27Q9HBJ8 222 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 PIGVQ9NUD9 493 aa19.13■□□□□ 0.65
CCDC88B-202ENST00000356786 SLIT2O94813 1529 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 ATG13O75143 517 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 ARFIP1P53367 373 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 RGS1Q08116 209 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 C6orf141Q5SZD1 244 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 FBXO42Q6P3S6 717 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 MARCH9Q86YJ5 346 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 SLC15A3Q8IY34 581 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 NTAN1Q96AB6 310 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 TMEM246Q9BRR3 403 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 MAGEH1Q9H213 219 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 IL1RAPQ9NPH3 570 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 CKLFQ9UBR5 152 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 POFUT2Q9Y2G5 429 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 GON4LQ3T8J9 2241 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 TRAV19A0A0A6YYK7 116 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 SLC25A12O75746 678 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 ALDOAP04075 364 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 PEPDP12955 493 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 XKP51811 444 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 TXNL4AP83876 142 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 PIGFQ07326 219 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 ZNF248Q8NDW4 579 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 FAM110BQ8TC76 370 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 SPPL2BQ8TCT7 592 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 MFSD1Q9H3U5 465 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 A0A1B0GVG6 124 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 LRRC14BA6NHZ5 514 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 HLA-DQB2P05538 268 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 PPP1R3AQ16821 1122 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 PYURFQ96I23 114 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 ZNF354BQ96LW1 612 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 C1QTNF7Q9BXJ2 289 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 PITPNM1O00562 1244 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 CYP3A5P20815 502 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 DGKEP52429 567 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 RPL6Q02878 288 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 SLC10A7Q0GE19 358 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 OR4F3Q6IEY1 312 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 TMEM192Q8IY95 271 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 LSM14AQ8ND56 463 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 ZMIZ2Q8NF64 920 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 ZNF431Q8TF32 576 aaPredicted RBP19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 CCM2LQ9NUG4 571 aaPredicted RBP19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 FAIMQ9NVQ4 179 aa19.12■□□□□ 0.65
CCDC88B-202ENST00000356786 G6PDP11413 515 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 ZNF45Q02386 682 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 KIAA1161Q6NSJ0 714 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 SPAG16Q8N0X2 631 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 CXorf40BQ96DE9 158 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 TUBA1CQ9BQE3 449 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 TBC1D14Q9P2M4 693 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 DAPL1A0PJW8 107 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 OR6C75A6NL08 312 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 H0YAE9 185 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 TLR4O00206 839 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 CORO1AP31146 461 aaKnown RBP19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 PITPNAQ00169 270 aa19.11■□□□□ 0.65
CCDC88B-202ENST00000356786 GRB14Q14449 540 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms