RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 COL21A1Q96P44 957 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 QRFPRQ96P65 431 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 C1orf109Q9NX04 203 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 DNAJC27Q9NZQ0 273 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 CFAP97Q9P2B7 532 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 AASSQ9UDR5 926 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 MLXQ9UH92 298 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 AP3M1Q9Y2T2 418 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 CLIC1O00299 241 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 PLK4O00444 970 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 NRP1O14786 923 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 ALPPL2P10696 532 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 MAPK12P53778 367 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 DAOAP59103 153 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 MOGSQ13724 837 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 GNA13Q14344 377 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 CRB2Q5IJ48 1285 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 SLC39A4Q6P5W5 647 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.52□□□□□ -1.05
RTN3-202ENST00000339997 NEK7Q8TDX7 302 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 SKA1Q96BD8 255 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 CXorf40BQ96DE9 158 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 BTN2A3PQ96KV6 586 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 SIGLEC10Q96LC7 697 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 NSUN3Q9H649 340 aaKnown RBP8.52□□□□□ -1.05
RTN3-202ENST00000339997 ZBTB26Q9HCK0 441 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 MIOSQ9NXC5 875 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 RDH8Q9NYR8 311 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 FZD10Q9ULW2 581 aa8.52□□□□□ -1.05
RTN3-202ENST00000339997 PTPRZ1P23471 2315 aaPredicted RBP8.52□□□□□ -1.05
RTN3-202ENST00000339997 WDFY3Q8IZQ1 3526 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 MYO18AQ92614 2054 aaKnown RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 DCLK1O15075 740 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 ORC5O43913 435 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 SCELO95171 688 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 FGBP02675 491 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 ALDOAP04075 364 aaKnown RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 HOXC6P09630 235 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 ATF6P18850 670 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 MAT2AP31153 395 aaKnown RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 SMIM11AP58511 58 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 BTN3A2P78410 334 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 MRPS6P82932 125 aaKnown RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 KCNAB2Q13303 367 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 KCNJ11Q14654 390 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 ZNF829Q3KNS6 432 aaPredicted RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 ANXA8L1Q5VT79 327 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 DRICH1Q6PGQ1 229 aaPredicted RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 FOXR2Q6PJQ5 311 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 EPGNQ6UW88 154 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 PIWIL3Q7Z3Z3 882 aaKnown RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 HID1Q8IV36 788 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 SCAIQ8N9R8 606 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 NAXEQ8NCW5 288 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 CXorf40AQ8TE69 158 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 CLCC1Q96S66 551 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 FAM129BQ96TA1 746 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 GPER1Q99527 375 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 SLC6A15Q9H2J7 730 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 ANKRA2Q9H9E1 313 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 CXXC1Q9P0U4 656 aaPredicted RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 NUP50Q9UKX7 468 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 SLC22A14Q9Y267 594 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 COQ4Q9Y3A0 265 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 FAM159BA6NKW6 160 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 OR1F1O43749 312 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 TLX2O43763 284 aaPredicted RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 RPP14O95059 124 aaKnown RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 CTSEP14091 401 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 ENGP17813 658 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 ITIH1P19827 911 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 TACR2P21452 398 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 HOXA10P31260 410 aaPredicted RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 ACVRL1P37023 503 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 CD97P48960 835 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 HYAL2Q12891 473 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 USP41Q3LFD5 358 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 CAPN13Q6MZZ7 669 aaPredicted RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 SLC30A6Q6NXT4 461 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 FAM180BQ6P0A1 224 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 TMEM53Q6P2H8 277 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 KIAA1324Q6UXG2 1013 aaKnown RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 ZNF517Q6ZMY9 492 aaPredicted RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 RTL4Q6ZR62 310 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 MSANTD1Q6ZTZ1 278 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 CYP2U1Q7Z449 544 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 TXNDC5Q8NBS9 432 aaKnown RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 STYXQ8WUJ0 223 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 AP2M1Q96CW1 435 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 RNF31Q96EP0 1072 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 SPATA5L1Q9BVQ7 753 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 POLR3BQ9NW08 1133 aaPredicted RBP8.51□□□□□ -1.05
RTN3-202ENST00000339997 ERVK13-1Q9NX77 482 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 FBXL3Q9UKT7 428 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 GIT1Q9Y2X7 761 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 PTCH2Q9Y6C5 1203 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 ZNF780BQ9Y6R6 833 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 FXYD6-FXYD2A0A087WZ82 144 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 CXCL11O14625 94 aa8.51□□□□□ -1.05
RTN3-202ENST00000339997 PRMT3O60678 531 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms