RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 OMA1Q96E52 524 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 IL4I1Q96RQ9 567 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 LHPPQ9H008 270 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 ATP13A3Q9H7F0 1226 aa11.67□□□□□ -0.54
USP1-201ENST00000339950 C5orf58C9J3I9 102 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 PSMD11O00231 422 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 TBX1O43435 398 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 NDUFB5O43674 189 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 ASNA1O43681 348 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 CLDN9O95484 217 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 TRBC1P01850 177 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 C1QCP02747 245 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 OGNP20774 298 aaKnown RBP11.66□□□□□ -0.54
USP1-201ENST00000339950 ATP6V1E1P36543 226 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 NKX2-5P52952 324 aaPredicted RBP11.66□□□□□ -0.54
USP1-201ENST00000339950 NCS1P62166 190 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 CACNG1Q06432 222 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 EPS8Q12929 822 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 NCCRP1Q6ZVX7 275 aaPredicted RBP11.66□□□□□ -0.54
USP1-201ENST00000339950 MEX3DQ86XN8 651 aaKnown RBP11.66□□□□□ -0.54
USP1-201ENST00000339950 SLC15A4Q8N697 577 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 UROC1Q96N76 676 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 CERS4Q9HA82 394 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 SACM1LQ9NTJ5 587 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 CAB39Q9Y376 341 aaPredicted RBP11.66□□□□□ -0.54
USP1-201ENST00000339950 FER1L6Q2WGJ9 1857 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 OR6C75A6NL08 312 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 VPS4BO75351 444 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 PIGAP37287 484 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 PTGER3P43115 390 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 CDH12P55289 794 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 ATP13A5Q4VNC0 1218 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 CTSL3PQ5NE16 218 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 NEK10Q6ZWH5 1172 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 RD3Q7Z3Z2 195 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 LILRA3Q8N6C8 439 aaPredicted RBP11.66□□□□□ -0.54
USP1-201ENST00000339950 RPL3LQ92901 407 aaKnown RBP11.66□□□□□ -0.54
USP1-201ENST00000339950 NACC2Q96BF6 587 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 MYRFLQ96LU7 910 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 HIPK3Q9H422 1215 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 NLE1Q9NVX2 485 aaPredicted RBP11.66□□□□□ -0.54
USP1-201ENST00000339950 DUSP12Q9UNI6 340 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 DNMT3AQ9Y6K1 912 aaPredicted RBP11.66□□□□□ -0.54
USP1-201ENST00000339950 TCRBV3S1A0A5B6 114 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 ANKDD1BA6NHY2 528 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 CREG1O75629 220 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 PDYNP01213 254 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 ESR1P03372 595 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 OR56A5P0C7T3 313 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 RAP2AP10114 183 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 BCKDHAP12694 445 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 ENGP17813 658 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 GRK3P35626 688 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 BDKRB1P46663 353 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 CD47Q08722 323 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 GPR17Q13304 367 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 XKR4Q5GH76 650 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 CYHR1Q6ZMK1 362 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 CYP2U1Q7Z449 544 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 CNTN4Q8IWV2 1026 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 PLEKHA8Q96JA3 519 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 TMEM121BQ9BXQ6 578 aaPredicted RBP11.66□□□□□ -0.54
USP1-201ENST00000339950 HMG20AQ9NP66 347 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 C5AR2Q9P296 337 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 ZNF831Q5JPB2 1677 aa11.66□□□□□ -0.54
USP1-201ENST00000339950 UNC80Q8N2C7 3258 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 BRWD1Q9NSI6 2320 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 ZNF840PA6NDX5 716 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 H3BMQ9 156 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 M0QZQ0 153 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 ZNF623O75123 536 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 PFKLP17858 780 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 MAPKAPK2P49137 400 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 RPS26P62854 115 aaKnown RBP11.65□□□□□ -0.54
USP1-201ENST00000339950 SPIBQ01892 262 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 SREBF2Q12772 1141 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 USP39Q53GS9 565 aaKnown RBP11.65□□□□□ -0.54
USP1-201ENST00000339950 FAM217AQ8IXS0 508 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 SLC7A5P1Q8MH63 180 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 ZHX1-C8orf76Q96EF9 292 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 COG8Q96MW5 612 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 OR51B5Q9H339 312 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 SGK2Q9HBY8 427 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 IL26Q9NPH9 171 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 MIEF1Q9NQG6 463 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 MRPL17Q9NRX2 175 aaKnown RBP11.65□□□□□ -0.54
USP1-201ENST00000339950 C1orf109Q9NX04 203 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 ZNF225Q9UK10 706 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 YIPF1Q9Y548 306 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 SQORQ9Y6N5 450 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 CD70P32970 193 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 SLC13A2Q13183 592 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 MBTPS1Q14703 1052 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 NPTX1Q15818 432 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 INAQ16352 499 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 ADNP2Q6IQ32 1131 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 TNFAIP8L2Q6P589 184 aaPredicted RBP11.65□□□□□ -0.54
USP1-201ENST00000339950 TXNDC11Q6PKC3 985 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 CFAP206Q8IYR0 622 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 NELL1Q92832 810 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms