RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 CUL1Q13616 776 aa15.29■□□□□ 0.04
CLN3-201ENST00000333496 PWWP2BQ6NUJ5 590 aa15.29■□□□□ 0.04
CLN3-201ENST00000333496 C2orf73Q8N5S3 287 aaPredicted RBP15.29■□□□□ 0.04
CLN3-201ENST00000333496 GPR21Q99679 349 aa15.29■□□□□ 0.04
CLN3-201ENST00000333496 PDE7BQ9NP56 450 aa15.29■□□□□ 0.04
CLN3-201ENST00000333496 WHRNQ9P202 907 aa15.29■□□□□ 0.04
CLN3-201ENST00000333496 DHRS7Q9Y394 339 aa15.29■□□□□ 0.04
CLN3-201ENST00000333496 COMMD10Q9Y6G5 202 aa15.29■□□□□ 0.04
CLN3-201ENST00000333496 IGSF10Q6WRI0 2623 aa15.29■□□□□ 0.04
CLN3-201ENST00000333496 LOC101059948A0A1B0GTJ6 334 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 RASGRF2O14827 1237 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 KDM1AO60341 852 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 LIFP15018 202 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 CD9P21926 228 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 ATP1A2P50993 1020 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 TRADDQ15628 312 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 ZIC1Q15915 447 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 BPHLQ86WA6 291 aaPredicted RBP15.28■□□□□ 0.04
CLN3-201ENST00000333496 FAM20CQ8IXL6 584 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 BBOF1Q8ND07 529 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 FBXO36Q8NEA4 188 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 OR2L8Q8NGY9 312 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 CD200R1Q8TD46 325 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 DENND1AQ8TEH3 1009 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 RAD51AP1Q96B01 352 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 NDNQ99608 321 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 CCDC68Q9H2F9 335 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 FAM60AQ9NP50 221 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 KLHL42Q9P2K6 505 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 CCDC88CQ9P219 2028 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 BSNQ9UPA5 3926 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 ISM1B1AKI9 464 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 PRICKLE3O43900 615 aaPredicted RBP15.28■□□□□ 0.04
CLN3-201ENST00000333496 MSL3P1P0C860 447 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 MAP4P27816 1152 aaKnown RBP15.28■□□□□ 0.04
CLN3-201ENST00000333496 MAP7Q14244 749 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 KIR2DS3Q14952 304 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 EEF1AKMT2Q5JPI9 291 aaKnown RBP15.28■□□□□ 0.04
CLN3-201ENST00000333496 RBM20Q5T481 1227 aaKnown RBP15.28■□□□□ 0.04
CLN3-201ENST00000333496 TMTC4Q5T4D3 741 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 CYB5D1Q6P9G0 228 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 CYHR1Q6ZMK1 362 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 GALNT6Q8NCL4 622 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 FOPNLQ96NB1 174 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 BBC3Q96PG8 261 aaPredicted RBP15.28■□□□□ 0.04
CLN3-201ENST00000333496 FCRL4Q96PJ5 515 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 LNPEPQ9UIQ6 1025 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 PCDHGA4Q9Y5G9 962 aa15.28■□□□□ 0.04
CLN3-201ENST00000333496 A0A0J9YY10 115 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 ARHGEF33A8MVX0 844 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 NDC80O14777 642 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 HCRTR1O43613 425 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 PSIP1O75475 530 aaKnown RBP15.27■□□□□ 0.03
CLN3-201ENST00000333496 GABRA4P48169 554 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 ABHD18Q0P651 414 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 CALCOCO2Q13137 446 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 FRG1Q14331 258 aaKnown RBP15.27■□□□□ 0.03
CLN3-201ENST00000333496 SLC5A12Q1EHB4 618 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 PRAMEF17Q5VTA0 474 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 KIAA1614Q5VZ46 1190 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 TTC23LQ6PF05 361 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 CDHR3Q6ZTQ4 885 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 KIAA0408Q6ZU52 694 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 NEK10Q6ZWH5 1172 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 GALNT7Q86SF2 657 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 TAX1BP1Q86VP1 789 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 ZBED8Q8IZ13 594 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 C19orf47Q8N9M1 422 aaKnown RBP15.27■□□□□ 0.03
CLN3-201ENST00000333496 INPP5DQ92835 1189 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 PPANQ9NQ55 473 aaKnown RBP15.27■□□□□ 0.03
CLN3-201ENST00000333496 ZNF446Q9NWS9 450 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 MOCS1Q9NZB8 636 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 SLC39A10Q9ULF5 831 aa15.27■□□□□ 0.03
CLN3-201ENST00000333496 MDC1Q14676 2089 aaKnown RBP15.27■□□□□ 0.03
CLN3-201ENST00000333496 NTRK1P04629 796 aa15.26■□□□□ 0.03
CLN3-201ENST00000333496 CCNFP41002 786 aa15.26■□□□□ 0.03
CLN3-201ENST00000333496 STAT5AP42229 794 aa15.26■□□□□ 0.03
CLN3-201ENST00000333496 CDKN2DP55273 166 aa15.26■□□□□ 0.03
CLN3-201ENST00000333496 TTLL9Q3SXZ7 439 aa15.26■□□□□ 0.03
CLN3-201ENST00000333496 TEX35Q5T0J7 233 aa15.26■□□□□ 0.03
CLN3-201ENST00000333496 PCSK4Q6UW60 755 aa15.26■□□□□ 0.03
CLN3-201ENST00000333496 C6orf15Q6UXA7 325 aaPredicted RBP15.26■□□□□ 0.03
CLN3-201ENST00000333496 CPNE9Q8IYJ1 553 aa15.26■□□□□ 0.03
CLN3-201ENST00000333496 ESX1Q8N693 406 aa15.26■□□□□ 0.03
CLN3-201ENST00000333496 SLC38A9Q8NBW4 561 aa15.26■□□□□ 0.03
CLN3-201ENST00000333496 OR1L3Q8NH93 324 aa15.26■□□□□ 0.03
CLN3-201ENST00000333496 GABPB2Q8TAK5 448 aaPredicted RBP15.26■□□□□ 0.03
CLN3-201ENST00000333496 HMGCLL1Q8TB92 370 aa15.26■□□□□ 0.03
CLN3-201ENST00000333496 AKIRIN1Q9H9L7 192 aaPredicted RBP15.26■□□□□ 0.03
CLN3-201ENST00000333496 UTP11Q9Y3A2 253 aaKnown RBP15.26■□□□□ 0.03
CLN3-201ENST00000333496 A0A1W2PPV9 198 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 TMEM150CB9EJG8 249 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 VPS26AO75436 327 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 MPC1LP0DKB6 136 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 F8A1P23610 371 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 PGGT1BP53609 377 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 FASTKQ14296 549 aaKnown RBP15.25■□□□□ 0.03
CLN3-201ENST00000333496 ZDHHC24Q6UX98 284 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 OR9A1PQ8NGU1 263 aa15.25■□□□□ 0.03
CLN3-201ENST00000333496 OR8K5Q8NH50 307 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms