RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 GBAP04062 536 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 ARHGAP8P85298 464 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 FAM174BQ3ZCQ3 159 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 THOC6Q86W42 341 aaKnown RBP13.2□□□□□ -0.3
RFFL-201ENST00000315249 ZNF641Q96N77 438 aaPredicted RBP13.2□□□□□ -0.3
RFFL-201ENST00000315249 FCRL4Q96PJ5 515 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 MYRFQ9Y2G1 1151 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 OR6C74A6NCV1 312 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 SCDO00767 359 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 ARSAP15289 507 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 PDX1P52945 283 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 NUDT13Q86X67 352 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 C11orf65Q8NCR3 313 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 SERINC1Q9NRX5 453 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 DNAAF2Q9NVR5 837 aaKnown RBP13.2□□□□□ -0.3
RFFL-201ENST00000315249 OR1A2Q9Y585 309 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 ALS2Q96Q42 1657 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 SETD1AO15047 1707 aaKnown RBP13.2□□□□□ -0.3
RFFL-201ENST00000315249 TNFRSF10BO14763 440 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 PMM2O15305 246 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 ACTR3P61158 418 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 TRAF7Q6Q0C0 670 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 ATCAYQ86WG3 371 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 PHOSPHO2Q8TCD6 241 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 ZNF483Q8TF39 744 aaPredicted RBP13.2□□□□□ -0.3
RFFL-201ENST00000315249 IGSF8Q969P0 613 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 NMD3Q96D46 503 aaKnown RBP13.2□□□□□ -0.3
RFFL-201ENST00000315249 SH3GL2Q99962 352 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 HOXD13P35453 343 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 GLYATQ6IB77 296 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 ZNF781Q8N8C0 355 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 NAT14Q8WUY8 206 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 PIH1D2Q8WWB5 315 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 RAB7BQ96AH8 199 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 LINC00597Q9H2U6 94 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 XKR8Q9H6D3 395 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 MAGEB17A8MXT2 336 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 CLUP10909 449 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 ST13P50502 369 aaKnown RBP13.2□□□□□ -0.3
RFFL-201ENST00000315249 PEG10Q86TG7 708 aaKnown RBP13.2□□□□□ -0.3
RFFL-201ENST00000315249 CALML5Q9NZT1 146 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 NOX1Q9Y5S8 564 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 ELOVL7A1L3X0 281 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 DUX1O43812 170 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 ZNF217O75362 1048 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 HNF1BP35680 557 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 SLC22A15Q8IZD6 547 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 APCDD1Q8J025 514 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 TDRD1Q9BXT4 1180 aaKnown RBP13.2□□□□□ -0.3
RFFL-201ENST00000315249 VPS29Q9UBQ0 182 aa13.2□□□□□ -0.3
RFFL-201ENST00000315249 PLK4O00444 970 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 SOCS5O75159 536 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 ATP6V1G2O95670 118 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 ASGR2P07307 311 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 ID2Q02363 134 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 ADRM1Q16186 407 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 SNAPC1Q16533 368 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 THAP3Q8WTV1 239 aaPredicted RBP13.19□□□□□ -0.3
RFFL-201ENST00000315249 TUBGCP5Q96RT8 1024 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 FAM227AF5H4B4 570 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 TSPAN6O43657 245 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 BCL10O95999 233 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 KHKP50053 298 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 ADGRD1Q6QNK2 874 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 SPPL2CQ8IUH8 684 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 GHDCQ8N2G8 530 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 MIEF2Q96C03 454 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 HOPXQ9BPY8 73 aaPredicted RBP13.19□□□□□ -0.3
RFFL-201ENST00000315249 C8orf89P0DMQ9 161 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 HNRNPKP61978 463 aaKnown RBP eCLIP13.19□□□□□ -0.31e-7■■□□□ 14.5
RFFL-201ENST00000315249 RPS14P62263 151 aaKnown RBP13.19□□□□□ -0.3
RFFL-201ENST00000315249 HMGCS1Q01581 520 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 DCST1Q5T197 706 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 RIT1Q92963 219 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 UTS2RQ9UKP6 389 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 UBE2J2Q8N2K1 259 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 PIK3C3Q8NEB9 887 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 OR9A1PQ8NGU1 263 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 PLEKHO2Q8TD55 490 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 RHBDD1Q8TEB9 315 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 SLC13A3Q8WWT9 602 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 CMTM7Q96FZ5 175 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 COQ7Q99807 217 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 ACSL5Q9ULC5 683 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 A0A1W2PRB8 838 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 ZNF726A6NNF4 738 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 ECI2O75521 394 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 IL33O95760 270 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 JUNP05412 331 aaKnown RBP13.19□□□□□ -0.3
RFFL-201ENST00000315249 ITGA1P56199 1179 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 SLC25A11Q02978 314 aaKnown RBP13.19□□□□□ -0.3
RFFL-201ENST00000315249 TRIM16LQ309B1 348 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 IQCHQ86VS3 1027 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 TERB1Q8NA31 727 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 WDR6Q9NNW5 1121 aaKnown RBP13.19□□□□□ -0.3
RFFL-201ENST00000315249 ZCCHC3Q9NUD5 404 aaKnown RBP13.19□□□□□ -0.3
RFFL-201ENST00000315249 FNIP2Q9P278 1114 aa13.19□□□□□ -0.3
RFFL-201ENST00000315249 C2orf74A8MZ97 194 aa13.18□□□□□ -0.3
RFFL-201ENST00000315249 PTGESO14684 152 aa13.18□□□□□ -0.3
RFFL-201ENST00000315249 SIX3O95343 332 aaPredicted RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms