RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 SHMT1P34896 483 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 ERVK-8P63133 956 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 ZNF181Q2M3W8 571 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 C10orf82Q8WW14 230 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 TSNAXQ99598 290 aaKnown RBP13.61□□□□□ -0.23
CSPG4-201ENST00000308508 TAS2R10Q9NYW0 307 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 RAI2Q9Y5P3 530 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 DLGAP1O14490 977 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 CYP3A5P20815 502 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 RPS3P23396 243 aaKnown RBP eCLIP13.61□□□□□ -0.23
CSPG4-201ENST00000308508 HSD11B1P28845 292 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 RPS14P62263 151 aaKnown RBP13.61□□□□□ -0.23
CSPG4-201ENST00000308508 SCARB2Q14108 478 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 CDK10Q15131 360 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 SPATS1Q496A3 300 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 KIAA1161Q6NSJ0 714 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 CENPSQ8N2Z9 138 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 CORO1BQ9BR76 489 aa13.61□□□□□ -0.23
CSPG4-201ENST00000308508 C9IYK1 514 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 SLITRK5O94991 958 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 HLA-DPB1P04440 258 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 EEFSECP57772 596 aaKnown RBP13.6□□□□□ -0.23
CSPG4-201ENST00000308508 GJA9P57773 515 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 OR12D2P58182 307 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 ADGRD2Q7Z7M1 963 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 PLD5Q8N7P1 536 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 ASCC1Q8N9N2 400 aaKnown RBP13.6□□□□□ -0.23
CSPG4-201ENST00000308508 EIF2B3Q9NR50 452 aaKnown RBP13.6□□□□□ -0.23
CSPG4-201ENST00000308508 HCN2Q9UL51 889 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 CENPBD1B2RD01 187 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 AHCYP23526 432 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 CHIT1Q13231 466 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 GANABQ14697 944 aaKnown RBP13.6□□□□□ -0.23
CSPG4-201ENST00000308508 PLEKHN1Q494U1 663 aaPredicted RBP13.6□□□□□ -0.23
CSPG4-201ENST00000308508 TOR1AIP1Q5JTV8 583 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 ATAD1Q8NBU5 361 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 TBX5Q99593 518 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 SRPRAP08240 638 aaKnown RBP13.6□□□□□ -0.23
CSPG4-201ENST00000308508 VARSP26640 1264 aaKnown RBP13.6□□□□□ -0.23
CSPG4-201ENST00000308508 TSTQ16762 297 aaKnown RBP13.6□□□□□ -0.23
CSPG4-201ENST00000308508 SYT16Q17RD7 645 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 CES5AQ6NT32 575 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 IQCHQ86VS3 1027 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 LRRC58Q96CX6 371 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.6□□□□□ -0.23
CSPG4-201ENST00000308508 PON3Q15166 354 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 CELF3Q5SZQ8 465 aaKnown RBP13.6□□□□□ -0.23
CSPG4-201ENST00000308508 ELMOD2Q8IZ81 293 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 KIAA0319LQ8IZA0 1049 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 MFSD8Q8NHS3 518 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 THRSPQ92748 146 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 FTHL17Q9BXU8 183 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 ADARB2Q9NS39 739 aaKnown RBP13.6□□□□□ -0.23
CSPG4-201ENST00000308508 TBX10O75333 385 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 KCTD19Q17RG1 926 aaPredicted RBP13.6□□□□□ -0.23
CSPG4-201ENST00000308508 DNM1P34Q6PK57 102 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 ADGRA1Q86SQ6 560 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 ZNF101Q8IZC7 436 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 C16orf58Q96GQ5 468 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 ELOA3DA6NLF2 546 aaPredicted RBP13.6□□□□□ -0.23
CSPG4-201ENST00000308508 CLDN5O00501 218 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 MFSD11O43934 449 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 ELOA3BQ3SY89 546 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 PDSS2Q86YH6 399 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 NXPE1Q8N323 547 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 PROKR2Q8NFJ6 384 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 ELOA3Q8NG57 546 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 AZIN2Q96A70 460 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 PHOX2BQ99453 314 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 DUSP26Q9BV47 211 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 POLLQ9UGP5 575 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 FBXW2Q9UKT8 454 aa13.6□□□□□ -0.23
CSPG4-201ENST00000308508 C9JVG2 144 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 OR1F1O43749 312 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 PSMD10O75832 226 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 INMTO95050 263 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 ANXA3P12429 323 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 TBRG1Q3YBR2 411 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 OTOP3Q7RTS5 596 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 CYP2U1Q7Z449 544 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 GJD4Q96KN9 370 aaPredicted RBP13.59□□□□□ -0.23
CSPG4-201ENST00000308508 ENY2Q9NPA8 101 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 RPH3AQ9Y2J0 694 aaPredicted RBP13.59□□□□□ -0.23
CSPG4-201ENST00000308508 H3BSA7 217 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 OR4F21O95013 312 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 HERVK_113P63132 956 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 OR2T5Q6IEZ7 315 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 VSTM1Q6UX27 236 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 ZNF527Q8NB42 609 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 OR2T29Q8NH02 315 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 ERVK-6Q9BXR3 956 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 EBF2Q9HAK2 575 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 OSER1Q9NX31 292 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 FLRT1Q9NZU1 646 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 XPNPEP2O43895 674 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 PIK3CBP42338 1070 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 AVPR1BP47901 424 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 TAS2R43P59537 309 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 CHAF1BQ13112 559 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 IKBKEQ14164 716 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms