RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 TOR1AIP1Q5JTV8 583 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 GLYATQ6IB77 296 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 TPGS1Q6ZTW0 290 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 HDAC10Q969S8 669 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 FCRL2Q96LA5 508 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF3P17036 446 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 AOC1P19801 751 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 RASGEF1BQ0VAM2 473 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 NIPAL1Q6NVV3 410 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 SLC22A16Q86VW1 577 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 FOXRED2Q8IWF2 684 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 APOLD1Q96LR9 279 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 HMGXB4Q9UGU5 601 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 PADI2Q9Y2J8 665 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 GPSM3Q9Y4H4 160 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 BEX3Q00994 111 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 PLEKHG6Q3KR16 790 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 IQCCQ4KMZ1 466 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 KLHL22Q53GT1 634 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 CHSY3Q70JA7 882 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 GALNT12Q8IXK2 581 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 SNIP1Q8TAD8 396 aaKnown RBP9.68□□□□□ -0.86
COL6A3-201ENST00000295550 PGLSO95336 258 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 DDX6P26196 483 aaKnown RBP eCLIP9.68□□□□□ -0.86
COL6A3-201ENST00000295550 OTOP3Q7RTS5 596 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 DHRS1Q96LJ7 313 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 C12orf42Q96LP6 360 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 KAT7O95251 611 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 ITPKAP23677 461 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 GNPDA1P46926 289 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF132P52740 706 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 GPX6P59796 221 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 GRK1Q15835 563 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 HSDL1Q3SXM5 330 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 PLEKHG4Q58EX7 1191 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 PITRM1Q5JRX3 1037 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF431Q8TF32 576 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-201ENST00000295550 BTN2A3PQ96KV6 586 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 TIMM8BQ9Y5J9 83 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-201ENST00000295550 CBX2Q14781 532 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-201ENST00000295550 GPR153Q6NV75 609 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 XKRXQ6PP77 449 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 SPATA9Q9BWV2 254 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 TMPRSS4Q9NRS4 437 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 FAM105AQ9NUU6 356 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 STYXL1Q9Y6J8 313 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 TRIM64A6NGJ6 449 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 SCELO95171 688 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 SYVN1Q86TM6 617 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 ANKRD46Q86W74 232 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 PYROXD2Q8N2H3 581 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 OR6K6Q8NGW6 343 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 OR4C6Q8NH72 309 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 BCAS3Q9H6U6 928 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 TMED5Q9Y3A6 229 aa9.68□□□□□ -0.86
COL6A3-201ENST00000295550 TPST2O60704 377 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 XYLBO75191 536 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 C22orf31O95567 290 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 CD36P16671 472 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 AMD1P17707 334 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 SLC15A1P46059 708 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 SCGB2B2Q4G0G5 96 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 SSX6Q7RTT6 188 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 CADM2Q8N3J6 435 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 LENG8Q96PV6 779 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 AGAP2Q99490 1192 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 TAS2R1Q9NYW7 299 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 DTLQ9NZJ0 730 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 SLC7A8Q9UHI5 535 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 MDC1Q14676 2089 aaKnown RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 SNAPC5O75971 98 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 TOMM5Q8N4H5 51 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF366Q8N895 744 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 TMEM27Q9HBJ8 222 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 TESMINQ9Y4I5 508 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 TRPM6Q9BX84 2022 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 E9PAM4 449 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 MSCO60682 206 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 SLC35G4P0C7Q5 338 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF280AP59817 542 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 RPP38P78345 283 aaKnown RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 TRMT10BQ6PF06 316 aaKnown RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 ANKFN1Q8N957 763 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 FZD8Q9H461 694 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 TCF7L1Q9HCS4 588 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 ACSS2Q9NR19 701 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 MTRRQ9UBK8 725 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 C14orf166Q9Y224 244 aaKnown RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 TRAV19A0A0A6YYK7 116 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF705EA8MWA4 302 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF487B1APH4 448 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 PDPK1O15530 556 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 ATP5C1P36542 298 aaKnown RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 PRR5P85299 388 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 MOGSQ13724 837 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 MSS51Q4VC12 460 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 CAPN13Q6MZZ7 669 aaPredicted RBP9.67□□□□□ -0.86
COL6A3-201ENST00000295550 C17orf64Q86WR6 236 aa9.67□□□□□ -0.86
COL6A3-201ENST00000295550 TMEM126BQ8IUX1 230 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms