RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 LCLAT1Q6UWP7 414 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 ZNF627Q7L945 461 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 CCNKO75909 580 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 C2P06681 752 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 HOXB9P17482 250 aaPredicted RBP9.16□□□□□ -0.94
CUX1-201ENST00000292535 GFOD2Q3B7J2 385 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 RGMBQ6NW40 437 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 GK5Q6ZS86 529 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 RASGRP3Q8IV61 690 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 PCDH19Q8TAB3 1148 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 NMUR1Q9HB89 426 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 PDE10AQ9Y233 779 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 ATP6AP2A0A1C7CYW4 349 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 CPSF4LA6NMK7 179 aaKnown RBP9.16□□□□□ -0.94
CUX1-201ENST00000292535 M0R129 80 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 TBX1O43435 398 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 ITGA10O75578 1167 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 ATP6AP2O75787 350 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 IFNA21P01568 189 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 ECT2LQ008S8 904 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 RFTN1Q14699 578 aaPredicted RBP9.16□□□□□ -0.94
CUX1-201ENST00000292535 EML3Q32P44 896 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 FSTL4Q6MZW2 842 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 RNF19BQ6ZMZ0 732 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 DNAAF1Q8NEP3 725 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 NODALQ96S42 347 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 SLC5A7Q9GZV3 580 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 TRIM36Q9NQ86 728 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 NAV3Q8IVL0 2385 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 LRRC32Q14392 662 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 PDCD4Q53EL6 469 aaKnown RBP9.16□□□□□ -0.94
CUX1-201ENST00000292535 C2orf73Q8N5S3 287 aaPredicted RBP9.16□□□□□ -0.94
CUX1-201ENST00000292535 SPERTQ8NA61 448 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 CDH22Q9UJ99 828 aa9.16□□□□□ -0.94
CUX1-201ENST00000292535 FFAR2O15552 330 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 LYPLA1O75608 230 aaPredicted RBP9.15□□□□□ -0.94
CUX1-201ENST00000292535 HSD3B1P14060 373 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 FLT3LGP49771 235 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 PPP2R2DQ66LE6 453 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 OR10A6Q8NH74 314 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 COPS5Q92905 334 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 ATG10Q9H0Y0 220 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 CDT1Q9H211 546 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 EURLQ9NYK6 297 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 SHBGP04278 402 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 ANXA4P09525 319 aaPredicted RBP9.15□□□□□ -0.94
CUX1-201ENST00000292535 PLA2G16P53816 162 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 AP1S3Q96PC3 154 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 ASPNQ9BXN1 380 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 CD320Q9NPF0 282 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 MSI1O43347 362 aaKnown RBP9.15□□□□□ -0.94
CUX1-201ENST00000292535 GSTM3P21266 225 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 NUDT13Q86X67 352 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 ZNF565Q8N9K5 539 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 SMPDL3BQ92485 455 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 LPGAT1Q92604 370 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 SLC35G5Q96KT7 338 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 TCAF1Q9Y4C2 921 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 DOCK11Q5JSL3 2073 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 MAP2K7O14733 419 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 GJB6O95452 261 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 TNFSF9P41273 254 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 MAGEA12P43365 314 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 AP2S1P53680 142 aaPredicted RBP9.15□□□□□ -0.94
CUX1-201ENST00000292535 DDR1Q08345 913 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 PRPF38BQ5VTL8 546 aaKnown RBP9.15□□□□□ -0.94
CUX1-201ENST00000292535 C7orf57Q8NEG2 295 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 DGKBQ9Y6T7 804 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 LMTK2Q8IWU2 1503 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 CSTF2P33240 577 aaKnown RBP eCLIP9.15□□□□□ -0.94
CUX1-201ENST00000292535 REP15Q6BDI9 236 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 LOXHD1Q8IVV2 1947 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 TRIM64BA6NI03 449 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 CLDN5O00501 218 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 SPATA31D3P0C874 917 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 CRHR2Q13324 411 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 SPATA31D4Q6ZUB0 917 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 P2RY8Q86VZ1 359 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 TRPV4Q9HBA0 871 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 RALGAPA1Q6GYQ0 2036 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 LYPLA2O95372 231 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 PSKH1P11801 424 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 F8A1P23610 371 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 FAM76BQ5HYJ3 339 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 MBOAT1Q6ZNC8 495 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 AMIGO2Q86SJ2 522 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 CAMKVQ8NCB2 501 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 FBXO15Q8NCQ5 510 aaPredicted RBP9.15□□□□□ -0.94
CUX1-201ENST00000292535 PMM1Q92871 262 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 C19orf25Q9UFG5 118 aaPredicted RBP9.15□□□□□ -0.94
CUX1-201ENST00000292535 AZGP1P25311 298 aaKnown RBP9.15□□□□□ -0.94
CUX1-201ENST00000292535 GLP1RP43220 463 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 SEPHS1P49903 392 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 ST3GAL4Q11206 333 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 SCARB2Q14108 478 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 ARHGAP40Q5TG30 622 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 ZNF709Q8N972 641 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 C12orf29Q8N999 325 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 TMCO6Q96DC7 493 aa9.15□□□□□ -0.94
CUX1-201ENST00000292535 KLHL5Q96PQ7 755 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms