RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 BCAP31P51572 246 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 VLDLRP98155 873 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 OGDHQ02218 1023 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 TEAD4Q15561 434 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 CYP1B1Q16678 543 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 RBM20Q5T481 1227 aaKnown RBP11.23□□□□□ -0.61
USP53-201ENST00000274030 BICRALQ6AI39 1079 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 C7orf57Q8NEG2 295 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 CMASQ8NFW8 434 aaPredicted RBP11.23□□□□□ -0.61
USP53-201ENST00000274030 TNFAIP8L1Q8WVP5 186 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 IL4I1Q96RQ9 567 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 COMMD3Q9UBI1 195 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 IL36AQ9UHA7 158 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 A8MT66 165 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 MTRF1O75570 445 aaKnown RBP11.23□□□□□ -0.61
USP53-201ENST00000274030 KLK1P06870 262 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 COL9A2Q14055 689 aaPredicted RBP11.23□□□□□ -0.61
USP53-201ENST00000274030 ADGRE1Q14246 886 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 OR4F3Q6IEY1 312 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 SLC22A15Q8IZD6 547 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 RASSF5Q8WWW0 418 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 POLR2J3Q9H1A7 115 aaKnown RBP11.23□□□□□ -0.61
USP53-201ENST00000274030 NEUROD4Q9HD90 331 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 POLMQ9NP87 494 aaPredicted RBP11.23□□□□□ -0.61
USP53-201ENST00000274030 OXSMQ9NWU1 459 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 STOML2Q9UJZ1 356 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 SNX7Q9UNH6 387 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 WNT6Q9Y6F9 365 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 AHSGP02765 367 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 RPS6KA3P51812 740 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 ZNF280AP59817 542 aaPredicted RBP11.23□□□□□ -0.61
USP53-201ENST00000274030 ERVK-8P63133 956 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 CAND1Q86VP6 1230 aaKnown RBP11.23□□□□□ -0.61
USP53-201ENST00000274030 SETD6Q8TBK2 473 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 DCAKDQ8WVC6 231 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 RFKQ969G6 155 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 NUSAP1Q9BXS6 441 aaKnown RBP11.23□□□□□ -0.61
USP53-201ENST00000274030 POLE3Q9NRF9 147 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 CLDND1Q9NY35 253 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 RIMKLBQ9ULI2 386 aa11.23□□□□□ -0.61
USP53-201ENST00000274030 A0A1W2PRG6 482 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 FAM234BA2RU67 622 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 BDKRB1P46663 353 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 SCARB2Q14108 478 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 ZFP69Q49AA0 526 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 ZNF311Q5JNZ3 666 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 ULK3Q6PHR2 472 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 RAB43Q86YS6 212 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 C10orf82Q8WW14 230 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 C8orf48Q96LL4 319 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 C11orf84Q9BUA3 381 aaPredicted RBP11.22□□□□□ -0.61
USP53-201ENST00000274030 CALML5Q9NZT1 146 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 VPS29Q9UBQ0 182 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 ZDHHC2Q9UIJ5 367 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 MRC1P22897 1456 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 CPED1A4D0V7 1026 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 ERI3O43414 337 aaKnown RBP11.22□□□□□ -0.61
USP53-201ENST00000274030 INMTO95050 263 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 CFIP05156 583 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 ALPPP05187 535 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 RAP2AP10114 183 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 ZNF823P16415 610 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 HOXB6P17509 224 aaKnown RBP11.22□□□□□ -0.61
USP53-201ENST00000274030 TSPAN5P62079 268 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 GPM6BQ13491 265 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 ASTE1Q2TB18 679 aaPredicted RBP11.22□□□□□ -0.61
USP53-201ENST00000274030 IDNKQ5T6J7 187 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 ZNF613Q6PF04 617 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 STX12Q86Y82 276 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 C1orf52Q8N6N3 182 aaKnown RBP11.22□□□□□ -0.61
USP53-201ENST00000274030 NIPA2Q8N8Q9 360 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 NPLOC4Q8TAT6 608 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 C2orf15Q8WU43 125 aaKnown RBP11.22□□□□□ -0.61
USP53-201ENST00000274030 CANT1Q8WVQ1 401 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 KCNC2Q96PR1 638 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 OSBPL2Q9H1P3 480 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 C8orf4Q9NR00 106 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 ZNF282Q9UDV7 671 aaPredicted RBP11.22□□□□□ -0.61
USP53-201ENST00000274030 H3BSH0 61 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 AOC2O75106 756 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 ZNF432O94892 652 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 PGRP06401 933 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 JAG1P78504 1218 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 CBFBQ13951 182 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 E2F2Q14209 437 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 MSS51Q4VC12 460 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 PIGWQ7Z7B1 504 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 TMEM110Q86TL2 294 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 OSTM1Q86WC4 334 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 OR5T3Q8NGG3 340 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 NTAN1Q96AB6 310 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 ACDQ96AP0 544 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 COQ8BQ96D53 544 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 PKP4Q99569 1192 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 TAC3Q9UHF0 121 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 URB1O60287 2271 aaKnown RBP11.22□□□□□ -0.61
USP53-201ENST00000274030 A8MU76 341 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 REM1O75628 298 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 ARHGDIBP52566 201 aa11.22□□□□□ -0.61
USP53-201ENST00000274030 HSF2Q03933 536 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms