RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ANTXRLA6NF34 631 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 LEFTY2O00292 366 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 GREM1O60565 184 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 PRAMEF4O60810 478 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 PFKLP17858 780 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 RPL26P61254 145 aaKnown RBP16.22■□□□□ 0.19
VPS54-201ENST00000272322 DGCR6Q14129 220 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 PRAMEF9Q5VWM5 478 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 NRTNQ99748 197 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 C1orf109Q9NX04 203 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 ZNF451Q9Y4E5 1061 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 OARD1Q9Y530 152 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 PCDHGA8Q9Y5G5 932 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 TOR1BO14657 336 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 CAPNS1P04632 268 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 THRBP10828 461 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 COL6A1P12109 1028 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 MYF6P23409 242 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 HTR1EP28566 365 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 RPS14P62263 151 aaKnown RBP16.22■□□□□ 0.19
VPS54-201ENST00000272322 IER5LQ5T953 404 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 R3HCC1LQ7Z5L2 792 aaKnown RBP16.22■□□□□ 0.19
VPS54-201ENST00000272322 SPRED2Q7Z698 418 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 LSRQ86X29 649 aaPredicted RBP16.22■□□□□ 0.19
VPS54-201ENST00000272322 CNIH3Q8TBE1 160 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 STON2Q8WXE9 905 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 NPLQ9BXD5 320 aaPredicted RBP16.22■□□□□ 0.19
VPS54-201ENST00000272322 RASSF1Q9NS23 344 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 COQ6Q9Y2Z9 468 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 BACE2Q9Y5Z0 518 aa16.22■□□□□ 0.19
VPS54-201ENST00000272322 PER2O15055 1255 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 ITGB8P26012 769 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 MAP4P27816 1152 aaKnown RBP16.21■□□□□ 0.19
VPS54-201ENST00000272322 MEF2AQ02078 507 aaPredicted RBP16.21■□□□□ 0.19
VPS54-201ENST00000272322 MAL2Q969L2 176 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 UBE2FQ969M7 185 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 TSEN34Q9BSV6 310 aaKnown RBP16.21■□□□□ 0.19
VPS54-201ENST00000272322 RIBC2Q9H4K1 309 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 AMBNQ9NP70 447 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 MAGEL2Q9UJ55 1249 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 PRKAB1Q9Y478 270 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 WNT6Q9Y6F9 365 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 H7C0S8 307 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 RFXANKO14593 260 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 KRT6AP02538 564 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 KRT6BP04259 564 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 KRT6CP48668 564 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 PSMD7P51665 324 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 KCNAB2Q13303 367 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 NAE1Q13564 534 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 TCEA2Q15560 299 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 TTLL9Q3SXZ7 439 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 CRIPAKQ8N1N5 446 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 RHNO1Q9BSD3 238 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 ACAT2Q9BWD1 397 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 HEBP1Q9NRV9 189 aa16.21■□□□□ 0.19
VPS54-201ENST00000272322 FCGR1AP12314 374 aa16.21■□□□□ 0.18
VPS54-201ENST00000272322 CDH1P12830 882 aa16.21■□□□□ 0.18
VPS54-201ENST00000272322 TNFRSF1BP20333 461 aa16.21■□□□□ 0.18
VPS54-201ENST00000272322 MATN1P21941 496 aa16.21■□□□□ 0.18
VPS54-201ENST00000272322 METAP1P53582 386 aa16.21■□□□□ 0.18
VPS54-201ENST00000272322 SNRPD1P62314 119 aaKnown RBP16.21■□□□□ 0.18
VPS54-201ENST00000272322 IL5RAQ01344 420 aa16.21■□□□□ 0.18
VPS54-201ENST00000272322 IRF8Q02556 426 aa16.21■□□□□ 0.18
VPS54-201ENST00000272322 PATL1Q86TB9 770 aaKnown RBP16.21■□□□□ 0.18
VPS54-201ENST00000272322 PANX1Q96RD7 426 aa16.21■□□□□ 0.18
VPS54-201ENST00000272322 KIAA1522Q9P206 1035 aaPredicted RBP16.21■□□□□ 0.18
VPS54-201ENST00000272322 CXCL14O95715 111 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 RAP2AP10114 183 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 EPORP19235 508 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 GGT1P19440 569 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 XPAP23025 273 aaPredicted RBP16.2■□□□□ 0.18
VPS54-201ENST00000272322 NSG1P42857 185 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 CDK9P50750 372 aaKnown RBP16.2■□□□□ 0.18
VPS54-201ENST00000272322 DAG1Q14118 895 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 PON2Q15165 354 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 KCTD21Q4G0X4 260 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 ARSIQ5FYB1 569 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 XKR6Q5GH73 641 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 ZC3H7AQ8IWR0 971 aaKnown RBP16.2■□□□□ 0.18
VPS54-201ENST00000272322 GAB3Q8WWW8 586 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 C1QTNF3Q9BXJ4 246 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 SPG21Q9NZD8 308 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 CCL27Q9Y4X3 112 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 TTC34A8MYJ7 566 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 OPN1SWP03999 348 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 RECQLP46063 649 aaPredicted RBP16.2■□□□□ 0.18
VPS54-201ENST00000272322 ALDH3B2P48448 385 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 GRAMD4Q6IC98 578 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 USP45Q70EL2 814 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 SPRED1Q7Z699 444 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 MFSD2AQ8NA29 543 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 PDPRQ8NCN5 879 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 SH3BP4Q9P0V3 963 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 PPT2Q9UMR5 302 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 PCDHB3Q9Y5E6 796 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 UPK1AO00322 258 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 CREG1O75629 220 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 NUDT7P0C024 238 aa16.2■□□□□ 0.18
VPS54-201ENST00000272322 FMO3P31513 532 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms