RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 FAM172BPA6NC97 362 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 E5RI56 91 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 SMLR1H3BR10 107 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 SCO1O75880 301 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 TNFRSF1BP20333 461 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 IFNA8P32881 189 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 SLC15A1P46059 708 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 NFKB2Q00653 900 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 VGLL4Q14135 290 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 DMC1Q14565 340 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 KYAT1Q16773 422 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 PAMR1Q6UXH9 720 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 VANGL1Q8TAA9 524 aaPredicted RBP14.04□□□□□ -0.16
SDC1-201ENST00000254351 MYLPFQ96A32 169 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 KIAA1191Q96A73 305 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 ZBTB18Q99592 522 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 APOL4Q9BPW4 351 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 SLC25A51Q9H1U9 297 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 MMP27Q9H306 513 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 ZIM2Q9NZV7 527 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 XIRP2A4UGR9 3374 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 PDE4DIPQ5VU43 2346 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 OR2A25A4D2G3 310 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 M0R082 166 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 CACNG3O60359 315 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 VPS4BO75351 444 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 TBX18O95935 607 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 PGRP06401 933 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 OR4Q2P0C623 313 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 ENDOUP21128 410 aaKnown RBP14.04□□□□□ -0.16
SDC1-201ENST00000254351 SSTR4P31391 388 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 ARHGAP1Q07960 439 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 MAD2L1BPQ15013 274 aaPredicted RBP14.04□□□□□ -0.16
SDC1-201ENST00000254351 XKR7Q5GH72 579 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 SLC44A2Q8IWA5 706 aaPredicted RBP14.04□□□□□ -0.16
SDC1-201ENST00000254351 CYP4Z2PQ8N1L4 340 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 C3orf58Q8NDZ4 430 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 SETD9Q8NE22 299 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 SLC38A4Q969I6 547 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 PHOX2BQ99453 314 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 AARSD1Q9BTE6 412 aaKnown RBP14.04□□□□□ -0.16
SDC1-201ENST00000254351 NEUROG3Q9Y4Z2 214 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 HS3ST4Q9Y661 456 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 PHIPQ8WWQ0 1821 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 ERVH48-1M5A8F1 160 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 RYKP34925 604 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 CA5AP35218 305 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 SLC26A3P40879 764 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 SLC19A1P41440 591 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 SLC26A2P50443 739 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 NKX3-2P78367 333 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 SLC14A2Q15849 920 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 DDR2Q16832 855 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 ZRANB3Q5FWF4 1079 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 SDE2Q6IQ49 451 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 ZNF517Q6ZMY9 492 aaPredicted RBP14.04□□□□□ -0.16
SDC1-201ENST00000254351 RASAL3Q86YV0 1011 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 GLB1L3Q8NCI6 653 aaPredicted RBP14.04□□□□□ -0.16
SDC1-201ENST00000254351 KCTD13Q8WZ19 329 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 TFB2MQ9H5Q4 396 aaKnown RBP14.04□□□□□ -0.16
SDC1-201ENST00000254351 NSUN3Q9H649 340 aaKnown RBP14.04□□□□□ -0.16
SDC1-201ENST00000254351 IPPKQ9H8X2 491 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 ELP3Q9H9T3 547 aa14.04□□□□□ -0.16
SDC1-201ENST00000254351 MUSKO15146 869 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 GPR182O15218 404 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 PTTG1O95997 202 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 MMP2P08253 660 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 MSH3P20585 1137 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 CDKN2CP42773 168 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 VLDLRP98155 873 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 UBE3AQ05086 875 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 SETMARQ53H47 684 aaPredicted RBP14.03□□□□□ -0.16
SDC1-201ENST00000254351 IMP4Q96G21 291 aaKnown RBP14.03□□□□□ -0.16
SDC1-201ENST00000254351 YME1L1Q96TA2 773 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 EGFL8Q99944 293 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 DCAF13Q9NV06 445 aaKnown RBP14.03□□□□□ -0.16
SDC1-201ENST00000254351 OGDHLQ9ULD0 1010 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 SLC6A14Q9UN76 642 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 ANGPTL3Q9Y5C1 460 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 ISPDA4D126 451 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 E2F3O00716 465 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 WBP4O75554 376 aaKnown RBP14.03□□□□□ -0.16
SDC1-201ENST00000254351 RPS17P08708 135 aaKnown RBP14.03□□□□□ -0.16
SDC1-201ENST00000254351 PRR35P0CG20 571 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 CBLP22681 906 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 ACVRL1P37023 503 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 RENBPP51606 427 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 HUNKP57058 714 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 CDK10Q15131 360 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 ARMCX4Q5H9R4 360 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 ZNF544Q6NX49 715 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 SYCE2Q6PIF2 218 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 DOK6Q6PKX4 331 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 BHLHA9Q7RTU4 235 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 ZNF438Q7Z4V0 828 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 PIANPQ8IYJ0 282 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 PYURFQ96I23 114 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 TMEM39AQ9NV64 488 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 TMLHEQ9NVH6 421 aa14.03□□□□□ -0.16
SDC1-201ENST00000254351 MUTYHQ9UIF7 546 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms