RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 ZNF773Q6PK81 442 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 UTS2BQ765I0 119 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 DPP10Q8N608 796 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 LILRA3Q8N6C8 439 aaPredicted RBP20.79■□□□□ 0.92
TRIM28-201ENST00000253024 PAPD5Q8NDF8 572 aaKnown RBP20.79■□□□□ 0.92
TRIM28-201ENST00000253024 CHDHQ8NE62 594 aaPredicted RBP20.79■□□□□ 0.92
TRIM28-201ENST00000253024 SLCO3A1Q9UIG8 710 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 PDE10AQ9Y233 779 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 AGRPO00253 132 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 RPS14P62263 151 aaKnown RBP20.79■□□□□ 0.92
TRIM28-201ENST00000253024 SP3Q02447 781 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 BTG3Q14201 252 aaPredicted RBP20.79■□□□□ 0.92
TRIM28-201ENST00000253024 NR1D2Q14995 579 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 DPY19L1Q2PZI1 675 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 SNX20Q7Z614 316 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 STK40Q8N2I9 435 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 GPR156Q8NFN8 814 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 MAL2Q969L2 176 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 FUNDC2Q9BWH2 189 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 UGT2B28Q9BY64 529 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 CFAP97Q9P2B7 532 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 BAG5Q9UL15 447 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 INPPL1O15357 1258 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 PBLDP30039 288 aaPredicted RBP20.79■□□□□ 0.92
TRIM28-201ENST00000253024 DCTP40126 519 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 CARD16Q5EG05 197 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 C6orf141Q5SZD1 244 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 MED8Q96G25 268 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 PLEKHA8Q96JA3 519 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 RIMKLBQ9ULI2 386 aa20.79■□□□□ 0.92
TRIM28-201ENST00000253024 JAK1P23458 1154 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 DCKP27707 260 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 HTR1BP28222 390 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 RAD23AP54725 363 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 LMAN2Q12907 356 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 ABRQ12979 859 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 CRTC3Q6UUV7 619 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 TMEM150AQ86TG1 271 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 MICU2Q8IYU8 434 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 ABCB8Q9NUT2 735 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 C1orf109Q9NX04 203 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 OARD1Q9Y530 152 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 LOC100130705A0A1B0GUX0 176 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 FZD6O60353 706 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 NUDT7P0C024 238 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 COL6A1P12109 1028 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 EPORP19235 508 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 GABRR2P28476 465 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 LSRQ86X29 649 aaPredicted RBP20.78■□□□□ 0.92
TRIM28-201ENST00000253024 PDPRQ8NCN5 879 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 TSPEARQ8WU66 669 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 SORCS1Q8WY21 1168 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 PLD4Q96BZ4 506 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 TTLL2Q9BWV7 592 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 TBC1D23Q9NUY8 699 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 ERVK-18Q9QC07 812 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 PLXNA3P51805 1871 aa20.78■□□□□ 0.92
TRIM28-201ENST00000253024 SZT2Q5T011 3432 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 RFXANKO14593 260 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 PRAMEF4O60810 478 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 MAPK11Q15759 364 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 PRAMEF9Q5VWM5 478 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 LAIR2Q6ISS4 152 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 NEK5Q6P3R8 708 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 OR13F1Q8NGS4 319 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 ADAMTS19Q8TE59 1207 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 TUBA8Q9NY65 449 aaPredicted RBP20.77■□□□□ 0.92
TRIM28-201ENST00000253024 DNAJB9Q9UBS3 223 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 TMEM202A6NGA9 273 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 CLDN9O95484 217 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 FADS2O95864 444 aaKnown RBP20.77■□□□□ 0.92
TRIM28-201ENST00000253024 OPN1SWP03999 348 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 INHAP05111 366 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 LHCGRP22888 699 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 GPRC6AQ5T6X5 926 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 TMEM236Q5W0B7 351 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 ZNF461Q8TAF7 563 aa20.77■□□□□ 0.92
TRIM28-201ENST00000253024 PAX3P23760 479 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 B4GALNT1Q00973 533 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 C5orf22Q49AR2 442 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 CRTC1Q6UUV9 634 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 CYP4Z1Q86W10 505 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 ZDHHC21Q8IVQ6 265 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 EID3Q8N140 333 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 NXPE1Q8N323 547 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 TMCO5AQ8N6Q1 288 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 OSBPL10Q9BXB5 764 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 KAT8Q9H7Z6 458 aaKnown RBP20.76■□□□□ 0.91
TRIM28-201ENST00000253024 MAGEE1Q9HCI5 957 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 INTS6Q9UL03 887 aaKnown RBP20.76■□□□□ 0.91
TRIM28-201ENST00000253024 PCDHB1Q9Y5F3 818 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 TULP3O75386 442 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 ANXA5P08758 320 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 PSMB9P28065 219 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 VBP1P61758 197 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 GRIK2Q13002 908 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 VEPH1Q14D04 833 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 USP39Q53GS9 565 aaKnown RBP20.76■□□□□ 0.91
TRIM28-201ENST00000253024 LAIR1Q6GTX8 287 aa20.76■□□□□ 0.91
TRIM28-201ENST00000253024 CHST14Q8NCH0 376 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms