RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 CTSL3PQ5NE16 218 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 FAM171BQ6P995 826 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 ALDH16A1Q8IZ83 802 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 Q96MT0 163 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 CORO1BQ9BR76 489 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 TLR8Q9NR97 1041 aaKnown RBP11.7□□□□□ -0.54
USHBP1-201ENST00000252597 SLC25A37Q9NYZ2 338 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 USE1Q9NZ43 259 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 ENPP5Q9UJA9 477 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 FBXO10Q9UK96 956 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 LOC285095A0A1B0GVY8 99 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 ZNF701M0R085 212 aaPredicted RBP11.7□□□□□ -0.54
USHBP1-201ENST00000252597 KRT75O95678 551 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 EPB42P16452 691 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 MXD1Q05195 221 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 CCDC85BQ15834 202 aaPredicted RBP11.7□□□□□ -0.54
USHBP1-201ENST00000252597 SETMARQ53H47 684 aaPredicted RBP11.7□□□□□ -0.54
USHBP1-201ENST00000252597 VARS2Q5ST30 1063 aaKnown RBP11.7□□□□□ -0.54
USHBP1-201ENST00000252597 SUSD1Q6UWL2 747 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 TMC5Q6UXY8 1006 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 STX19Q8N4C7 294 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 LMNTD1Q8N9Z9 388 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 LKAAEAR1Q8TD35 194 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 GTF3C2Q8WUA4 911 aaPredicted RBP11.7□□□□□ -0.54
USHBP1-201ENST00000252597 GTF2H4Q92759 462 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 PPP3R2Q96LZ3 170 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 FBXO44Q9H4M3 255 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 REEP1Q9H902 201 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 TMEM248Q9NWD8 314 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 GIT1Q9Y2X7 761 aa11.7□□□□□ -0.54
USHBP1-201ENST00000252597 FAM92AA1XBS5 289 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 ANKRD66B4E2M5 251 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 COQ9O75208 318 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 PABPC1P11940 636 aaKnown RBP11.69□□□□□ -0.54
USHBP1-201ENST00000252597 ZNF33AQ06730 810 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 MANEALQ5VSG8 457 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 B3GNT8Q7Z7M8 397 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 AKAP14Q86UN6 197 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 ANKRD13BQ86YJ7 626 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 ADGRG2Q8IZP9 1017 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 TMEM132CQ8N3T6 1108 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 ADGRE3Q9BY15 652 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 FAM126AQ9BYI3 521 aaPredicted RBP11.69□□□□□ -0.54
USHBP1-201ENST00000252597 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.69□□□□□ -0.54
USHBP1-201ENST00000252597 C1orf109Q9NX04 203 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 INTS6Q9UL03 887 aaKnown RBP11.69□□□□□ -0.54
USHBP1-201ENST00000252597 USP34Q70CQ2 3546 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 NDUFB5O43674 189 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 OGNP20774 298 aaKnown RBP11.69□□□□□ -0.54
USHBP1-201ENST00000252597 NFKB2Q00653 900 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 CST9Q5W186 159 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 PRSS55Q6UWB4 352 aaPredicted RBP11.69□□□□□ -0.54
USHBP1-201ENST00000252597 SLC16A12Q6ZSM3 486 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 OR5K1Q8NHB7 308 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 GTPBP3Q969Y2 492 aaKnown RBP11.69□□□□□ -0.54
USHBP1-201ENST00000252597 MED8Q96G25 268 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 APOL4Q9BPW4 351 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 COPS4Q9BT78 406 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 OLA1Q9NTK5 396 aaKnown RBP11.69□□□□□ -0.54
USHBP1-201ENST00000252597 IMPAD1Q9NX62 359 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 WDR37Q9Y2I8 494 aa11.69□□□□□ -0.54
USHBP1-201ENST00000252597 IFRD1O00458 451 aaPredicted RBP11.68□□□□□ -0.54
USHBP1-201ENST00000252597 OR7A17O14581 309 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 PRAMEF11O60813 436 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 WDR47O94967 919 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 INHBBP09529 407 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 BCKDHAP12694 445 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 SLC6A4P31645 630 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 PPP3CCP48454 512 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 SGSHP51688 502 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 ISL1P61371 349 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 CTF1Q16619 201 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 XKR4Q5GH76 650 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 UBE2UQ5VVX9 321 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 USP51Q70EK9 711 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 PTRH1Q86Y79 214 aaKnown RBP11.68□□□□□ -0.54
USHBP1-201ENST00000252597 SYT12Q8IV01 421 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 RIMKLAQ8IXN7 391 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 CLECL1Q8IZS7 167 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 C7orf57Q8NEG2 295 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 ERVK13-1Q9NX77 482 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 EHD3Q9NZN3 535 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 ARIH1Q9Y4X5 557 aaPredicted RBP11.68□□□□□ -0.54
USHBP1-201ENST00000252597 LRRC37A2A6NM11 1700 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 SDK1Q7Z5N4 2213 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 TAF4O00268 1085 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 CPNE6O95741 557 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 COX7A2P14406 83 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 RPS14P62263 151 aaKnown RBP11.68□□□□□ -0.54
USHBP1-201ENST00000252597 PURAQ00577 322 aaKnown RBP11.68□□□□□ -0.54
USHBP1-201ENST00000252597 MVKQ03426 396 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 SLC14A1Q13336 389 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 PARP15Q460N3 678 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 GTF2IRD2BQ6EKJ0 949 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 NADSYN1Q6IA69 706 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 TPGS1Q6ZTW0 290 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 GTF2IRD2Q86UP8 949 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 NLGN4XQ8N0W4 816 aa11.68□□□□□ -0.54
USHBP1-201ENST00000252597 ZNF548Q8NEK5 533 aaPredicted RBP11.68□□□□□ -0.54
USHBP1-201ENST00000252597 TUBA1CQ9BQE3 449 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms