RNA–Protein interactions for RNA: ENST00000641513.1

PHGDH-219, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 735 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-219ENST00000641513 ATF7IPQ6VMQ6 1270 aa11.28□□□□□ -0.6
PHGDH-219ENST00000641513 MRPL50Q8N5N7 158 aaKnown RBP11.28□□□□□ -0.6
PHGDH-219ENST00000641513 BABAM1Q9NWV8 329 aa11.28□□□□□ -0.6
PHGDH-219ENST00000641513 USP35Q9P2H5 1018 aa11.28□□□□□ -0.6
PHGDH-219ENST00000641513 CEMIPQ8WUJ3 1361 aa11.28□□□□□ -0.6
PHGDH-219ENST00000641513 OVOS2A0A0G2JMS6 1433 aa11.27□□□□□ -0.6
PHGDH-219ENST00000641513 NRAPQ86VF7 1730 aa11.27□□□□□ -0.61
PHGDH-219ENST00000641513 BTBD11A6QL63 1104 aa11.27□□□□□ -0.61
PHGDH-219ENST00000641513 RLBP1P12271 317 aa11.27□□□□□ -0.61
PHGDH-219ENST00000641513 TRIM27P14373 513 aa11.27□□□□□ -0.61
PHGDH-219ENST00000641513 IFNL2Q8IZJ0 200 aa11.27□□□□□ -0.61
PHGDH-219ENST00000641513 CARD10Q9BWT7 1032 aa11.27□□□□□ -0.61
PHGDH-219ENST00000641513 IL2RBP14784 551 aa11.26□□□□□ -0.61
PHGDH-219ENST00000641513 PHKG2P15735 406 aa11.26□□□□□ -0.61
PHGDH-219ENST00000641513 ITPRIPQ8IWB1 547 aa11.26□□□□□ -0.61
PHGDH-219ENST00000641513 NECTIN2Q92692 538 aa11.26□□□□□ -0.61
PHGDH-219ENST00000641513 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.26□□□□□ -0.61
PHGDH-219ENST00000641513 NWD2Q9ULI1 1742 aa11.26□□□□□ -0.61
PHGDH-219ENST00000641513 HSP90AB1P08238 724 aaKnown RBP11.25□□□□□ -0.61
PHGDH-219ENST00000641513 AAMPQ13685 434 aa11.25□□□□□ -0.61
PHGDH-219ENST00000641513 MVPQ14764 893 aaKnown RBP11.25□□□□□ -0.61
PHGDH-219ENST00000641513 ZCRB1Q8TBF4 217 aaKnown RBP11.25□□□□□ -0.61
PHGDH-219ENST00000641513 STK31Q9BXU1 1019 aa11.25□□□□□ -0.61
PHGDH-219ENST00000641513 ITGB4P16144 1822 aa11.24□□□□□ -0.61
PHGDH-219ENST00000641513 BRPF1P55201 1214 aaPredicted RBP11.24□□□□□ -0.61
PHGDH-219ENST00000641513 TMEM57Q8N5G2 664 aa11.24□□□□□ -0.61
PHGDH-219ENST00000641513 API5Q9BZZ5 524 aaKnown RBP11.24□□□□□ -0.61
PHGDH-219ENST00000641513 PCDH11XQ9BZA7 1347 aa11.24□□□□□ -0.61
PHGDH-219ENST00000641513 PCDH11YQ9BZA8 1340 aa11.24□□□□□ -0.61
PHGDH-219ENST00000641513 PLEKHG2Q9H7P9 1386 aa11.24□□□□□ -0.61
PHGDH-219ENST00000641513 C5P01031 1676 aa11.24□□□□□ -0.61
PHGDH-219ENST00000641513 CYP27B1O15528 508 aa11.23□□□□□ -0.61
PHGDH-219ENST00000641513 KCNQ3O43525 872 aa11.23□□□□□ -0.61
PHGDH-219ENST00000641513 SLC4A2P04920 1241 aa11.23□□□□□ -0.61
PHGDH-219ENST00000641513 CCDC30Q5VVM6 783 aa11.23□□□□□ -0.61
PHGDH-219ENST00000641513 DDX54Q8TDD1 881 aaKnown RBP11.23□□□□□ -0.61
PHGDH-219ENST00000641513 ARHGAP45Q92619 1136 aa11.23□□□□□ -0.61
PHGDH-219ENST00000641513 DDX19BQ9UMR2 479 aa11.23□□□□□ -0.61
PHGDH-219ENST00000641513 KDM6AO15550 1401 aaPredicted RBP11.23□□□□□ -0.61
PHGDH-219ENST00000641513 EIF2S2P20042 333 aaKnown RBP11.22□□□□□ -0.61
PHGDH-219ENST00000641513 CABP4P57796 275 aa11.22□□□□□ -0.61
PHGDH-219ENST00000641513 EIF4A1P60842 406 aaKnown RBP11.22□□□□□ -0.61
PHGDH-219ENST00000641513 SOS1Q07889 1333 aaPredicted RBP11.22□□□□□ -0.61
PHGDH-219ENST00000641513 HDGFL1Q5TGJ6 251 aa11.22□□□□□ -0.61
PHGDH-219ENST00000641513 N4BP2Q86UW6 1770 aaPredicted RBP11.22□□□□□ -0.61
PHGDH-219ENST00000641513 DCAF5Q96JK2 942 aa11.22□□□□□ -0.61
PHGDH-219ENST00000641513 SLC52A2Q9HAB3 445 aa11.22□□□□□ -0.61
PHGDH-219ENST00000641513 CCDC9Q9Y3X0 531 aaKnown RBP11.22□□□□□ -0.61
PHGDH-219ENST00000641513 TOGARAM1Q9Y4F4 1720 aa11.21□□□□□ -0.61
PHGDH-219ENST00000641513 KDM2BQ8NHM5 1336 aa11.21□□□□□ -0.61
PHGDH-219ENST00000641513 CENPQQ7L2Z9 268 aaPredicted RBP11.21□□□□□ -0.61
PHGDH-219ENST00000641513 NFATC2IPQ8NCF5 419 aa11.21□□□□□ -0.61
PHGDH-219ENST00000641513 LAMB4A4D0S4 1761 aa11.21□□□□□ -0.62
PHGDH-219ENST00000641513 JCADQ9P266 1359 aa11.2□□□□□ -0.62
PHGDH-219ENST00000641513 PTPRCP08575 1304 aa11.2□□□□□ -0.62
PHGDH-219ENST00000641513 ANP32AP39687 249 aaKnown RBP11.2□□□□□ -0.62
PHGDH-219ENST00000641513 TTC5Q8N0Z6 440 aa11.2□□□□□ -0.62
PHGDH-219ENST00000641513 CHMP4AQ9BY43 222 aa11.2□□□□□ -0.62
PHGDH-219ENST00000641513 CHMP4BQ9H444 224 aaKnown RBP11.2□□□□□ -0.62
PHGDH-219ENST00000641513 MRC1P22897 1456 aa11.19□□□□□ -0.62
PHGDH-219ENST00000641513 ABCC4O15439 1325 aa11.19□□□□□ -0.62
PHGDH-219ENST00000641513 SLC39A6Q13433 755 aa11.19□□□□□ -0.62
PHGDH-219ENST00000641513 G2E3Q7L622 706 aa11.19□□□□□ -0.62
PHGDH-219ENST00000641513 UBR2Q8IWV8 1755 aa11.18□□□□□ -0.62
PHGDH-219ENST00000641513 DOT1LQ8TEK3 1739 aa11.18□□□□□ -0.62
PHGDH-219ENST00000641513 HOXB7P09629 217 aa11.18□□□□□ -0.62
PHGDH-219ENST00000641513 FKBP5Q13451 457 aaPredicted RBP11.18□□□□□ -0.62
PHGDH-219ENST00000641513 SLC4A10Q6U841 1118 aa11.18□□□□□ -0.62
PHGDH-219ENST00000641513 ERICH6Q7L0X2 663 aa11.18□□□□□ -0.62
PHGDH-219ENST00000641513 C8orf37Q96NL8 207 aa11.18□□□□□ -0.62
PHGDH-219ENST00000641513 PAPPAQ13219 1627 aa11.17□□□□□ -0.62
PHGDH-219ENST00000641513 ZNF790Q6PG37 636 aa11.17□□□□□ -0.62
PHGDH-219ENST00000641513 NGLY1Q96IV0 654 aa11.17□□□□□ -0.62
PHGDH-219ENST00000641513 RWDD1Q9H446 243 aaPredicted RBP11.17□□□□□ -0.62
PHGDH-219ENST00000641513 PCDHB15Q9Y5E8 787 aa11.17□□□□□ -0.62
PHGDH-219ENST00000641513 AFDNP55196 1824 aaKnown RBP11.16□□□□□ -0.62
PHGDH-219ENST00000641513 ERVV-2B6SEH9 535 aa11.16□□□□□ -0.62
PHGDH-219ENST00000641513 EXOC5O00471 708 aa11.16□□□□□ -0.62
PHGDH-219ENST00000641513 GIGYF1O75420 1035 aaPredicted RBP11.16□□□□□ -0.62
PHGDH-219ENST00000641513 IGHDP01880 384 aa11.16□□□□□ -0.62
PHGDH-219ENST00000641513 CACNB1Q02641 598 aaPredicted RBP11.16□□□□□ -0.62
PHGDH-219ENST00000641513 FLIIQ13045 1269 aa11.16□□□□□ -0.62
PHGDH-219ENST00000641513 MEX3CQ5U5Q3 659 aaKnown RBP11.16□□□□□ -0.62
PHGDH-219ENST00000641513 IPO9Q96P70 1041 aaKnown RBP11.16□□□□□ -0.62
PHGDH-219ENST00000641513 BACH2Q9BYV9 841 aa11.16□□□□□ -0.62
PHGDH-219ENST00000641513 CHPF2Q9P2E5 772 aa11.16□□□□□ -0.62
PHGDH-219ENST00000641513 NOP58Q9Y2X3 529 aaKnown RBP11.16□□□□□ -0.62
PHGDH-219ENST00000641513 DISP2A7MBM2 1401 aa11.16□□□□□ -0.62
PHGDH-219ENST00000641513 SPATA31A1Q5TZJ5 1347 aa11.15□□□□□ -0.62
PHGDH-219ENST00000641513 A0A0G2JS52 829 aa11.15□□□□□ -0.62
PHGDH-219ENST00000641513 PRAMEF22A3QJZ6 481 aa11.15□□□□□ -0.62
PHGDH-219ENST00000641513 F6X3S4 739 aa11.15□□□□□ -0.62
PHGDH-219ENST00000641513 MAPK8IP2Q13387 824 aaPredicted RBP11.15□□□□□ -0.62
PHGDH-219ENST00000641513 NKX1-1Q15270 411 aaPredicted RBP11.15□□□□□ -0.62
PHGDH-219ENST00000641513 INTS3Q68E01 1043 aaKnown RBP11.15□□□□□ -0.62
PHGDH-219ENST00000641513 FMNL2Q96PY5 1086 aa11.15□□□□□ -0.62
PHGDH-219ENST00000641513 CDCA7Q9BWT1 371 aaPredicted RBP11.15□□□□□ -0.62
PHGDH-219ENST00000641513 C1orf115Q9H7X2 142 aa11.15□□□□□ -0.62
PHGDH-219ENST00000641513 ZBTB40Q9NUA8 1239 aa11.15□□□□□ -0.62
PHGDH-219ENST00000641513 RGS12O14924 1447 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms