RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 LMTK3Q96Q04 1460 aa19.6■□□□□ 0.73
CLN3-251ENST00000636853 ANKRD44Q8N8A2 993 aa19.6■□□□□ 0.73
CLN3-251ENST00000636853 CAMTA1Q9Y6Y1 1673 aa19.6■□□□□ 0.73
CLN3-251ENST00000636853 STRCQ7RTU9 1775 aa19.59■□□□□ 0.73
CLN3-251ENST00000636853 HDGFL1Q5TGJ6 251 aa19.59■□□□□ 0.73
CLN3-251ENST00000636853 CEP85Q6P2H3 762 aa19.59■□□□□ 0.73
CLN3-251ENST00000636853 SOS1Q07889 1333 aaPredicted RBP19.59■□□□□ 0.73
CLN3-251ENST00000636853 CCT4P50991 539 aaKnown RBP19.59■□□□□ 0.73
CLN3-251ENST00000636853 EIF4A1P60842 406 aaKnown RBP19.59■□□□□ 0.73
CLN3-251ENST00000636853 BTBD11A6QL63 1104 aa19.58■□□□□ 0.73
CLN3-251ENST00000636853 RNMTO43148 476 aaKnown RBP19.58■□□□□ 0.73
CLN3-251ENST00000636853 TNS3Q68CZ2 1445 aa19.58■□□□□ 0.73
CLN3-251ENST00000636853 CACNA1FO60840 1977 aa19.58■□□□□ 0.72
CLN3-251ENST00000636853 KDM3BQ7LBC6 1761 aa19.58■□□□□ 0.72
CLN3-251ENST00000636853 EIF2S2P20042 333 aaKnown RBP19.58■□□□□ 0.72
CLN3-251ENST00000636853 NBR1Q14596 966 aa19.58■□□□□ 0.72
CLN3-251ENST00000636853 NLRP2Q9NX02 1062 aa19.58■□□□□ 0.72
CLN3-251ENST00000636853 CHRNA2Q15822 529 aa19.57■□□□□ 0.72
CLN3-251ENST00000636853 RPAP2Q8IXW5 612 aaPredicted RBP19.57■□□□□ 0.72
CLN3-251ENST00000636853 DCTPP1Q9H773 170 aa19.57■□□□□ 0.72
CLN3-251ENST00000636853 UPF2Q9HAU5 1272 aaKnown RBP19.57■□□□□ 0.72
CLN3-251ENST00000636853 DAXXQ9UER7 740 aaPredicted RBP19.56■□□□□ 0.72
CLN3-251ENST00000636853 SPATA31A3Q5VYP0 1347 aa19.56■□□□□ 0.72
CLN3-251ENST00000636853 BRINP3Q76B58 766 aa19.55■□□□□ 0.72
CLN3-251ENST00000636853 PHAXQ9H814 394 aaKnown RBP19.55■□□□□ 0.72
CLN3-251ENST00000636853 ZNF335Q9H4Z2 1342 aaPredicted RBP19.55■□□□□ 0.72
CLN3-251ENST00000636853 COL18A1P39060 1754 aa19.54■□□□□ 0.72
CLN3-251ENST00000636853 TBC1D32Q96NH3 1257 aa19.54■□□□□ 0.72
CLN3-251ENST00000636853 RAPGEF4Q8WZA2 1011 aa19.54■□□□□ 0.72
CLN3-251ENST00000636853 CSB-PGBD3P0DP91 1061 aa19.53■□□□□ 0.72
CLN3-251ENST00000636853 MFAP1P55081 439 aaKnown RBP19.53■□□□□ 0.72
CLN3-251ENST00000636853 CHPF2Q9P2E5 772 aa19.52■□□□□ 0.72
CLN3-251ENST00000636853 BMP2KLQ5H9B9 411 aa19.51■□□□□ 0.71
CLN3-251ENST00000636853 CRYBG1Q9Y4K1 1723 aa19.51■□□□□ 0.71
CLN3-251ENST00000636853 APBB1O00213 710 aa19.51■□□□□ 0.71
CLN3-251ENST00000636853 GNAI2P04899 355 aa19.5■□□□□ 0.71
CLN3-251ENST00000636853 HOXB7P09629 217 aa19.5■□□□□ 0.71
CLN3-251ENST00000636853 C16orf71Q8IYS4 520 aaPredicted RBP19.5■□□□□ 0.71
CLN3-251ENST00000636853 OVOS2A0A0G2JMS6 1433 aa19.5■□□□□ 0.71
CLN3-251ENST00000636853 ANXA1P04083 346 aa19.5■□□□□ 0.71
CLN3-251ENST00000636853 TATP17735 454 aaPredicted RBP19.49■□□□□ 0.71
CLN3-251ENST00000636853 SLAIN2Q9P270 581 aa19.49■□□□□ 0.71
CLN3-251ENST00000636853 MEGF6O75095 1541 aa19.49■□□□□ 0.71
CLN3-251ENST00000636853 SMARCA5O60264 1052 aaPredicted RBP19.49■□□□□ 0.71
CLN3-251ENST00000636853 PLEKHM2Q8IWE5 1019 aa19.49■□□□□ 0.71
CLN3-251ENST00000636853 SIPA1L3O60292 1781 aaPredicted RBP19.48■□□□□ 0.71
CLN3-251ENST00000636853 HMMRO75330 724 aa19.48■□□□□ 0.71
CLN3-251ENST00000636853 GNAI3P08754 354 aa19.48■□□□□ 0.71
CLN3-251ENST00000636853 C22orf23Q9BZE7 217 aa19.48■□□□□ 0.71
CLN3-251ENST00000636853 PRAMEF22A3QJZ6 481 aa19.47■□□□□ 0.71
CLN3-251ENST00000636853 OTUD7AQ8TE49 926 aaPredicted RBP19.47■□□□□ 0.71
CLN3-251ENST00000636853 PXDNLA1KZ92 1463 aa19.47■□□□□ 0.71
CLN3-251ENST00000636853 N4BP2Q86UW6 1770 aaPredicted RBP19.46■□□□□ 0.71
CLN3-251ENST00000636853 GIGYF1O75420 1035 aaPredicted RBP19.46■□□□□ 0.71
CLN3-251ENST00000636853 PHKG2P15735 406 aa19.46■□□□□ 0.71
CLN3-251ENST00000636853 USP44Q9H0E7 712 aa19.46■□□□□ 0.71
CLN3-251ENST00000636853 SPG7Q9UQ90 795 aa19.46■□□□□ 0.71
CLN3-251ENST00000636853 ADAMTS7Q9UKP4 1686 aa19.46■□□□□ 0.71
CLN3-251ENST00000636853 CPDO75976 1380 aa19.46■□□□□ 0.71
CLN3-251ENST00000636853 RTL5Q5HYW3 569 aaPredicted RBP19.45■□□□□ 0.7
CLN3-251ENST00000636853 KDM6AO15550 1401 aaPredicted RBP19.45■□□□□ 0.7
CLN3-251ENST00000636853 GSPT1P15170 499 aaKnown RBP19.45■□□□□ 0.7
CLN3-251ENST00000636853 CHMP4AQ9BY43 222 aa19.45■□□□□ 0.7
CLN3-251ENST00000636853 LRRFIP2Q9Y608 721 aaKnown RBP19.45■□□□□ 0.7
CLN3-251ENST00000636853 PNMA6EA0A0J9YXQ4 647 aa19.44■□□□□ 0.7
CLN3-251ENST00000636853 PI4KAP2A4QPH2 592 aa19.44■□□□□ 0.7
CLN3-251ENST00000636853 PI4KAP1Q8N8J0 262 aa19.44■□□□□ 0.7
CLN3-251ENST00000636853 SOS2Q07890 1332 aaPredicted RBP19.44■□□□□ 0.7
CLN3-251ENST00000636853 SLC39A6Q13433 755 aa19.44■□□□□ 0.7
CLN3-251ENST00000636853 HEG1Q9ULI3 1381 aa19.44■□□□□ 0.7
CLN3-251ENST00000636853 SCN11AQ9UI33 1791 aa19.43■□□□□ 0.7
CLN3-251ENST00000636853 PROSER3Q2NL68 480 aa19.43■□□□□ 0.7
CLN3-251ENST00000636853 SRCIN1Q9C0H9 1055 aa19.43■□□□□ 0.7
CLN3-251ENST00000636853 DBF4Q9UBU7 674 aaPredicted RBP19.43■□□□□ 0.7
CLN3-251ENST00000636853 EXOC6BQ9Y2D4 811 aa19.43■□□□□ 0.7
CLN3-251ENST00000636853 ABCC6O95255 1503 aa19.43■□□□□ 0.7
CLN3-251ENST00000636853 UBTFL1P0CB47 393 aaPredicted RBP19.42■□□□□ 0.7
CLN3-251ENST00000636853 BECN1Q14457 450 aa19.42■□□□□ 0.7
CLN3-251ENST00000636853 TBC1D9Q6ZT07 1266 aa19.42■□□□□ 0.7
CLN3-251ENST00000636853 IFNL2Q8IZJ0 200 aa19.42■□□□□ 0.7
CLN3-251ENST00000636853 NFATC2IPQ8NCF5 419 aa19.42■□□□□ 0.7
CLN3-251ENST00000636853 DNAAF4Q8WXU2 420 aa19.42■□□□□ 0.7
CLN3-251ENST00000636853 SLC52A2Q9HAB3 445 aa19.42■□□□□ 0.7
CLN3-251ENST00000636853 PRDM11Q9NQV5 511 aa19.42■□□□□ 0.7
CLN3-251ENST00000636853 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.42■□□□□ 0.7
CLN3-251ENST00000636853 ATP8B2P98198 1209 aa19.42■□□□□ 0.7
CLN3-251ENST00000636853 TTC22Q5TAA0 569 aa19.41■□□□□ 0.7
CLN3-251ENST00000636853 USP35Q9P2H5 1018 aa19.41■□□□□ 0.7
CLN3-251ENST00000636853 CYP27B1O15528 508 aa19.41■□□□□ 0.7
CLN3-251ENST00000636853 ZNF790Q6PG37 636 aa19.41■□□□□ 0.7
CLN3-251ENST00000636853 ADCY9O60503 1353 aa19.4■□□□□ 0.7
CLN3-251ENST00000636853 BEND3Q5T5X7 828 aa19.4■□□□□ 0.7
CLN3-251ENST00000636853 TBC1D2Q9BYX2 928 aa19.39■□□□□ 0.69
CLN3-251ENST00000636853 CDC45O75419 566 aa19.39■□□□□ 0.69
CLN3-251ENST00000636853 NBPF7P0C2Y1 421 aaPredicted RBP19.38■□□□□ 0.69
CLN3-251ENST00000636853 TOM1L2Q6ZVM7 507 aa19.37■□□□□ 0.69
CLN3-251ENST00000636853 MAP3K2Q9Y2U5 619 aa19.37■□□□□ 0.69
CLN3-251ENST00000636853 PKD1L3Q7Z443 1732 aa19.37■□□□□ 0.69
CLN3-251ENST00000636853 DCAF5Q96JK2 942 aa19.37■□□□□ 0.69
CLN3-251ENST00000636853 WDR17Q8IZU2 1322 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms