RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	CCDC102B	Q68D86	513 aa		6.16	□□□□□ -1.42
CNOT1-223	ENST00000628857	LARP1	Q6PKG0	1096 aa	Known RBP	6.16	□□□□□ -1.42
CNOT1-223	ENST00000628857	GMCL1	Q96IK5	515 aa		6.16	□□□□□ -1.42
CNOT1-223	ENST00000628857	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	6.16	□□□□□ -1.42
CNOT1-223	ENST00000628857	RASA1	P20936	1047 aa		6.15	□□□□□ -1.42
CNOT1-223	ENST00000628857	GTF2E1	P29083	439 aa	Predicted RBP	6.15	□□□□□ -1.42
CNOT1-223	ENST00000628857	PTS	Q03393	145 aa		6.15	□□□□□ -1.42
CNOT1-223	ENST00000628857	PTK7	Q13308	1070 aa		6.15	□□□□□ -1.42
CNOT1-223	ENST00000628857	DYRK1B	Q9Y463	629 aa		6.15	□□□□□ -1.42
CNOT1-223	ENST00000628857		A6NJY4	79 aa		6.14	□□□□□ -1.43
CNOT1-223	ENST00000628857	FIGNL2	A6NMB9	653 aa		6.14	□□□□□ -1.43
CNOT1-223	ENST00000628857	TERT	O14746	1132 aa	Known RBP	6.14	□□□□□ -1.43
CNOT1-223	ENST00000628857	PPP1R15A	O75807	674 aa	Predicted RBP	6.14	□□□□□ -1.43
CNOT1-223	ENST00000628857	SEC13	P55735	322 aa		6.14	□□□□□ -1.43
CNOT1-223	ENST00000628857	PSME1	Q06323	249 aa		6.14	□□□□□ -1.43
CNOT1-223	ENST00000628857	NBPF10	Q6P3W6	841 aa	Known RBP	6.14	□□□□□ -1.43
CNOT1-223	ENST00000628857	TAS1R3	Q7RTX0	852 aa		6.14	□□□□□ -1.43
CNOT1-223	ENST00000628857	NBPF15	Q8N660	670 aa		6.14	□□□□□ -1.43
CNOT1-223	ENST00000628857	GAS2L2	Q8NHY3	880 aa		6.14	□□□□□ -1.43
CNOT1-223	ENST00000628857	RHBDD1	Q8TEB9	315 aa		6.14	□□□□□ -1.43
CNOT1-223	ENST00000628857	SLC16A10	Q8TF71	515 aa		6.14	□□□□□ -1.43
CNOT1-223	ENST00000628857	NANOS1	Q8WY41	292 aa	Known RBP	6.14	□□□□□ -1.43
CNOT1-223	ENST00000628857	RAB6B	Q9NRW1	208 aa		6.14	□□□□□ -1.43
CNOT1-223	ENST00000628857	TIMELESS	Q9UNS1	1208 aa		6.14	□□□□□ -1.43
CNOT1-223	ENST00000628857	RBM19	Q9Y4C8	960 aa	Known RBP	6.14	□□□□□ -1.43
CNOT1-223	ENST00000628857	ATG7	O95352	703 aa		6.13	□□□□□ -1.43
CNOT1-223	ENST00000628857	EPHA4	P54764	986 aa		6.13	□□□□□ -1.43
CNOT1-223	ENST00000628857	TLR1	Q15399	786 aa		6.13	□□□□□ -1.43
CNOT1-223	ENST00000628857	GNAS	Q5JWF2	1037 aa		6.13	□□□□□ -1.43
CNOT1-223	ENST00000628857	PRICKLE2	Q7Z3G6	844 aa		6.13	□□□□□ -1.43
CNOT1-223	ENST00000628857	TPCN2	Q8NHX9	752 aa		6.13	□□□□□ -1.43
CNOT1-223	ENST00000628857	C1orf216	Q8TAB5	229 aa		6.13	□□□□□ -1.43
CNOT1-223	ENST00000628857	ZNF775	Q96BV0	537 aa	Predicted RBP	6.13	□□□□□ -1.43
CNOT1-223	ENST00000628857	ZNF358	Q9NW07	568 aa		6.13	□□□□□ -1.43
CNOT1-223	ENST00000628857	SCHIP1	Q9P0W5	487 aa	Predicted RBP	6.13	□□□□□ -1.43
CNOT1-223	ENST00000628857	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	6.13	□□□□□ -1.43
CNOT1-223	ENST00000628857	KIAA1024	Q9UPX6	916 aa		6.13	□□□□□ -1.43
CNOT1-223	ENST00000628857	SENP3-EIF4A1	A0A087X0R7	540 aa		6.12	□□□□□ -1.43
CNOT1-223	ENST00000628857		H3BM21	787 aa		6.12	□□□□□ -1.43
CNOT1-223	ENST00000628857	PPFIA3	O75145	1194 aa		6.12	□□□□□ -1.43
CNOT1-223	ENST00000628857	VSIG8	P0DPA2	414 aa		6.12	□□□□□ -1.43
CNOT1-223	ENST00000628857	FOXK2	Q01167	660 aa		6.12	□□□□□ -1.43
CNOT1-223	ENST00000628857	POU4F2	Q12837	409 aa		6.12	□□□□□ -1.43
CNOT1-223	ENST00000628857	NFX1	Q12986	1120 aa	Known RBP	6.12	□□□□□ -1.43
CNOT1-223	ENST00000628857	CRTC2	Q53ET0	693 aa	Predicted RBP	6.12	□□□□□ -1.43
CNOT1-223	ENST00000628857	TMEM214	Q6NUQ4	689 aa	Known RBP	6.12	□□□□□ -1.43
CNOT1-223	ENST00000628857	ANKMY2	Q8IV38	441 aa		6.12	□□□□□ -1.43
CNOT1-223	ENST00000628857	ZNF295-AS1	Q8N0V1	137 aa		6.12	□□□□□ -1.43
CNOT1-223	ENST00000628857	STAG2	Q8N3U4	1231 aa		6.12	□□□□□ -1.43
CNOT1-223	ENST00000628857	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	6.12	□□□□□ -1.43
CNOT1-223	ENST00000628857	PBXIP1	Q96AQ6	731 aa		6.12	□□□□□ -1.43
CNOT1-223	ENST00000628857	NIFK	Q9BYG3	293 aa	Known RBP	6.12	□□□□□ -1.43
CNOT1-223	ENST00000628857		A0A1B0GTH6	734 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	ARID3C	A6NKF2	412 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	SOBP	A7XYQ1	873 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	USP17L15	C9J2P7	530 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	USP17L10	C9JJH3	530 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	USP17L13	C9JLJ4	530 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	USP17L12	C9JPN9	530 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	USP17L11	C9JVI0	530 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	USP17L21	D6R901	530 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	USP17L18	D6R9N7	530 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	USP17L22	D6RA61	530 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	USP17L17	D6RBQ6	530 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	USP17L19	D6RCP7	530 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	USP17L20	D6RJB6	530 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	USP17L24	Q0WX57	530 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	LBR	Q14739	615 aa	Known RBP	6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	LCE2A	Q5TA79	106 aa	Predicted RBP	6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	POTEA	Q6S8J7	498 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	TREML4	Q6UXN2	200 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	CCDC155	Q8N6L0	562 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	ARX	Q96QS3	562 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857	C1orf115	Q9H7X2	142 aa		6.11	□□□□□ -1.43
CNOT1-223	ENST00000628857		H7C1W4	665 aa		6.1	□□□□□ -1.43
CNOT1-223	ENST00000628857	WFS1	O76024	890 aa		6.1	□□□□□ -1.43
CNOT1-223	ENST00000628857	F11	P03951	625 aa		6.1	□□□□□ -1.43
CNOT1-223	ENST00000628857	RFX1	P22670	979 aa		6.1	□□□□□ -1.43
CNOT1-223	ENST00000628857	TEAD4	Q15561	434 aa		6.1	□□□□□ -1.43
CNOT1-223	ENST00000628857	SWI5	Q1ZZU3	235 aa		6.1	□□□□□ -1.43
CNOT1-223	ENST00000628857	CCDC82	Q8N4S0	544 aa		6.1	□□□□□ -1.43
CNOT1-223	ENST00000628857	IRF7	Q92985	503 aa		6.1	□□□□□ -1.43
CNOT1-223	ENST00000628857	TIMMDC1	Q9NPL8	285 aa		6.1	□□□□□ -1.43
CNOT1-223	ENST00000628857	SERTAD1	Q9UHV2	236 aa		6.1	□□□□□ -1.43
CNOT1-223	ENST00000628857	STAU1	O95793	577 aa	Known RBP	6.09	□□□□□ -1.43
CNOT1-223	ENST00000628857	ITGA6	P23229	1130 aa		6.09	□□□□□ -1.43
CNOT1-223	ENST00000628857	HIRA	P54198	1017 aa	Predicted RBP	6.09	□□□□□ -1.43
CNOT1-223	ENST00000628857	DPYD	Q12882	1025 aa		6.09	□□□□□ -1.43
CNOT1-223	ENST00000628857	C4orf17	Q53FE4	359 aa		6.09	□□□□□ -1.43
CNOT1-223	ENST00000628857	FAM200A	Q8TCP9	573 aa		6.09	□□□□□ -1.43
CNOT1-223	ENST00000628857	ZDHHC3	Q9NYG2	299 aa		6.09	□□□□□ -1.43
CNOT1-223	ENST00000628857	PSMA6	P60900	246 aa	Known RBP	6.08	□□□□□ -1.44
CNOT1-223	ENST00000628857	TRIM22	Q8IYM9	498 aa		6.08	□□□□□ -1.44
CNOT1-223	ENST00000628857	ZNF594	Q96JF6	807 aa	Predicted RBP	6.08	□□□□□ -1.44
CNOT1-223	ENST00000628857	GPC6	Q9Y625	555 aa	Predicted RBP	6.08	□□□□□ -1.44
CNOT1-223	ENST00000628857	ACIN1	Q9UKV3	1341 aa	Known RBP	6.07	□□□□□ -1.44
CNOT1-223	ENST00000628857	SFI1	A8K8P3	1242 aa		6.07	□□□□□ -1.44
CNOT1-223	ENST00000628857	RHOQ	P17081	205 aa		6.07	□□□□□ -1.44
CNOT1-223	ENST00000628857	NOS2	P35228	1153 aa		6.07	□□□□□ -1.44
CNOT1-223	ENST00000628857	TNS4	Q8IZW8	715 aa		6.07	□□□□□ -1.44

Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms