RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 C1orf115Q9H7X2 142 aa27.73■■■□□ 2.03
PNKP-220ENST00000627232 TEFQ10587 303 aa27.72■■■□□ 2.03
PNKP-220ENST00000627232 G2E3Q7L622 706 aa27.72■■■□□ 2.03
PNKP-220ENST00000627232 SIRT2Q8IXJ6 389 aa27.72■■■□□ 2.03
PNKP-220ENST00000627232 ZNF335Q9H4Z2 1342 aaPredicted RBP27.72■■■□□ 2.03
PNKP-220ENST00000627232 EIF4A1P60842 406 aaKnown RBP27.71■■■□□ 2.03
PNKP-220ENST00000627232 CHD1LQ86WJ1 897 aa27.71■■■□□ 2.03
PNKP-220ENST00000627232 RPAP2Q8IXW5 612 aaPredicted RBP27.7■■■□□ 2.02
PNKP-220ENST00000627232 PXDNLA1KZ92 1463 aa27.69■■■□□ 2.02
PNKP-220ENST00000627232 SOS2Q07890 1332 aaPredicted RBP27.69■■■□□ 2.02
PNKP-220ENST00000627232 ATP10DQ9P241 1426 aa27.69■■■□□ 2.02
PNKP-220ENST00000627232 FLIIQ13045 1269 aa27.68■■■□□ 2.02
PNKP-220ENST00000627232 MPRIPQ6WCQ1 1025 aa27.68■■■□□ 2.02
PNKP-220ENST00000627232 ANKRD44Q8N8A2 993 aa27.68■■■□□ 2.02
PNKP-220ENST00000627232 SLAIN2Q9P270 581 aa27.68■■■□□ 2.02
PNKP-220ENST00000627232 RAPGEF4Q8WZA2 1011 aa27.67■■■□□ 2.02
PNKP-220ENST00000627232 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.67■■■□□ 2.02
PNKP-220ENST00000627232 SCN11AQ9UI33 1791 aa27.67■■■□□ 2.02
PNKP-220ENST00000627232 BTBD11A6QL63 1104 aa27.67■■■□□ 2.02
PNKP-220ENST00000627232 HDGFL1Q5TGJ6 251 aa27.67■■■□□ 2.02
PNKP-220ENST00000627232 CABLES1Q8TDN4 633 aa27.67■■■□□ 2.02
PNKP-220ENST00000627232 NLRP2Q9NX02 1062 aa27.67■■■□□ 2.02
PNKP-220ENST00000627232 TATP17735 454 aaPredicted RBP27.65■■■□□ 2.02
PNKP-220ENST00000627232 PKD1L3Q7Z443 1732 aa27.65■■■□□ 2.02
PNKP-220ENST00000627232 DCTPP1Q9H773 170 aa27.64■■■□□ 2.02
PNKP-220ENST00000627232 NHSL1Q5SYE7 1610 aa27.64■■■□□ 2.01
PNKP-220ENST00000627232 FKBP5Q13451 457 aaPredicted RBP27.63■■■□□ 2.01
PNKP-220ENST00000627232 ANKRD45Q5TZF3 282 aa27.63■■■□□ 2.01
PNKP-220ENST00000627232 MEIS3Q99687 375 aa27.63■■■□□ 2.01
PNKP-220ENST00000627232 LNPKQ9C0E8 428 aa27.63■■■□□ 2.01
PNKP-220ENST00000627232 SPG7Q9UQ90 795 aa27.63■■■□□ 2.01
PNKP-220ENST00000627232 F6X3S4 739 aa27.62■■■□□ 2.01
PNKP-220ENST00000627232 CEP85Q6P2H3 762 aa27.62■■■□□ 2.01
PNKP-220ENST00000627232 ABCA3Q99758 1704 aa27.62■■■□□ 2.01
PNKP-220ENST00000627232 SLC4A10Q6U841 1118 aa27.62■■■□□ 2.01
PNKP-220ENST00000627232 HEG1Q9ULI3 1381 aa27.61■■■□□ 2.01
PNKP-220ENST00000627232 CSB-PGBD3P0DP91 1061 aa27.61■■■□□ 2.01
PNKP-220ENST00000627232 MEGF6O75095 1541 aa27.6■■■□□ 2.01
PNKP-220ENST00000627232 NECTIN2Q92692 538 aa27.6■■■□□ 2.01
PNKP-220ENST00000627232 CHRNA2Q15822 529 aa27.59■■■□□ 2.01
PNKP-220ENST00000627232 KCNQ3O43525 872 aa27.58■■■□□ 2.01
PNKP-220ENST00000627232 SEC24BO95487 1268 aa27.57■■■□□ 2
PNKP-220ENST00000627232 GNAI3P08754 354 aa27.57■■■□□ 2
PNKP-220ENST00000627232 UPF2Q9HAU5 1272 aaKnown RBP27.57■■■□□ 2
PNKP-220ENST00000627232 HMMRO75330 724 aa27.57■■■□□ 2
PNKP-220ENST00000627232 PARP4Q9UKK3 1724 aaKnown RBP27.56■■■□□ 2
PNKP-220ENST00000627232 PHKG2P15735 406 aa27.56■■■□□ 2
PNKP-220ENST00000627232 KDM6AO15550 1401 aaPredicted RBP27.55■■■□□ 2
PNKP-220ENST00000627232 GNAI2P04899 355 aa27.55■■■□□ 2
PNKP-220ENST00000627232 BMP2KLQ5H9B9 411 aa27.55■■■□□ 2
PNKP-220ENST00000627232 IFNL2Q8IZJ0 200 aa27.55■■■□□ 2
PNKP-220ENST00000627232 MRC1P22897 1456 aa27.54■■■□□ 2
PNKP-220ENST00000627232 EIF2S2P20042 333 aaKnown RBP27.54■■■□□ 2
PNKP-220ENST00000627232 GIGYF1O75420 1035 aaPredicted RBP27.52■■■□□ 2
PNKP-220ENST00000627232 PHAXQ9H814 394 aaKnown RBP27.52■■■□□ 2
PNKP-220ENST00000627232 PRDM11Q9NQV5 511 aa27.52■■■□□ 2
PNKP-220ENST00000627232 SLC52A2Q9HAB3 445 aa27.51■■■□□ 2
PNKP-220ENST00000627232 CHPF2Q9P2E5 772 aa27.51■■■□□ 2
PNKP-220ENST00000627232 DBF4Q9UBU7 674 aaPredicted RBP27.51■■■□□ 2
PNKP-220ENST00000627232 HSP90AB1P08238 724 aaKnown RBP27.51■■□□□ 1.99
PNKP-220ENST00000627232 WDR17Q8IZU2 1322 aa27.51■■□□□ 1.99
PNKP-220ENST00000627232 DCAF5Q96JK2 942 aa27.49■■□□□ 1.99
PNKP-220ENST00000627232 TBC1D32Q96NH3 1257 aa27.49■■□□□ 1.99
PNKP-220ENST00000627232 COL5A2P05997 1499 aaPredicted RBP27.48■■□□□ 1.99
PNKP-220ENST00000627232 SRCIN1Q9C0H9 1055 aa27.46■■□□□ 1.99
PNKP-220ENST00000627232 ATP8B2P98198 1209 aa27.46■■□□□ 1.99
PNKP-220ENST00000627232 DAXXQ9UER7 740 aaPredicted RBP27.46■■□□□ 1.99
PNKP-220ENST00000627232 CYP27B1O15528 508 aa27.45■■□□□ 1.98
PNKP-220ENST00000627232 ZNF790Q6PG37 636 aa27.45■■□□□ 1.98
PNKP-220ENST00000627232 DNAAF4Q8WXU2 420 aa27.45■■□□□ 1.98
PNKP-220ENST00000627232 USP44Q9H0E7 712 aa27.45■■□□□ 1.98
PNKP-220ENST00000627232 C5P01031 1676 aa27.44■■□□□ 1.98
PNKP-220ENST00000627232 PLEKHM2Q8IWE5 1019 aa27.44■■□□□ 1.98
PNKP-220ENST00000627232 HYPKQ9NX55 129 aa27.43■■□□□ 1.98
PNKP-220ENST00000627232 UBTFL1P0CB47 393 aaPredicted RBP27.42■■□□□ 1.98
PNKP-220ENST00000627232 ADCY9O60503 1353 aa27.42■■□□□ 1.98
PNKP-220ENST00000627232 BEND3Q5T5X7 828 aa27.41■■□□□ 1.98
PNKP-220ENST00000627232 TOM1L2Q6ZVM7 507 aa27.41■■□□□ 1.98
PNKP-220ENST00000627232 PI4KAP2A4QPH2 592 aa27.41■■□□□ 1.98
PNKP-220ENST00000627232 PI4KAP1Q8N8J0 262 aa27.41■■□□□ 1.98
PNKP-220ENST00000627232 NFATC2IPQ8NCF5 419 aa27.41■■□□□ 1.98
PNKP-220ENST00000627232 CARD10Q9BWT7 1032 aa27.41■■□□□ 1.98
PNKP-220ENST00000627232 DDX21Q9NR30 783 aaKnown RBP eCLIP27.4■■□□□ 1.98
PNKP-220ENST00000627232 LRRFIP2Q9Y608 721 aaKnown RBP27.4■■□□□ 1.98
PNKP-220ENST00000627232 PCDH11XQ9BZA7 1347 aa27.39■■□□□ 1.98
PNKP-220ENST00000627232 PCDH11YQ9BZA8 1340 aa27.39■■□□□ 1.98
PNKP-220ENST00000627232 EIF5BO60841 1220 aaKnown RBP27.38■■□□□ 1.97
PNKP-220ENST00000627232 ALDH1L1O75891 902 aa27.38■■□□□ 1.97
PNKP-220ENST00000627232 KSR2Q6VAB6 950 aa27.38■■□□□ 1.97
PNKP-220ENST00000627232 ANXA1P04083 346 aa27.37■■□□□ 1.97
PNKP-220ENST00000627232 MFAP1P55081 439 aaKnown RBP27.37■■□□□ 1.97
PNKP-220ENST00000627232 TTC22Q5TAA0 569 aa27.37■■□□□ 1.97
PNKP-220ENST00000627232 ZCRB1Q8TBF4 217 aaKnown RBP27.37■■□□□ 1.97
PNKP-220ENST00000627232 C22orf23Q9BZE7 217 aa27.37■■□□□ 1.97
PNKP-220ENST00000627232 SLC39A6Q13433 755 aa27.36■■□□□ 1.97
PNKP-220ENST00000627232 BECN1Q14457 450 aa27.36■■□□□ 1.97
PNKP-220ENST00000627232 LAMB4A4D0S4 1761 aa27.36■■□□□ 1.97
PNKP-220ENST00000627232 SHANK3Q9BYB0 1731 aa27.36■■□□□ 1.97
PNKP-220ENST00000627232 PRAMEF22A3QJZ6 481 aa27.36■■□□□ 1.97
PNKP-220ENST00000627232 DDX58O95786 925 aaKnown RBP27.36■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms