RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 EXOC6BQ9Y2D4 811 aa13.23□□□□□ -0.29
CUX1-221ENST00000622516 TSHZ3Q63HK5 1081 aa13.23□□□□□ -0.29
CUX1-221ENST00000622516 RPAP2Q8IXW5 612 aaPredicted RBP13.23□□□□□ -0.29
CUX1-221ENST00000622516 C19orf44Q9H6X5 657 aa13.23□□□□□ -0.29
CUX1-221ENST00000622516 NFAT5O94916 1531 aa13.23□□□□□ -0.29
CUX1-221ENST00000622516 CCT4P50991 539 aaKnown RBP13.22□□□□□ -0.29
CUX1-221ENST00000622516 TEFQ10587 303 aa13.22□□□□□ -0.29
CUX1-221ENST00000622516 BTBD11A6QL63 1104 aa13.21□□□□□ -0.29
CUX1-221ENST00000622516 PNMA6EA0A0J9YXQ4 647 aa13.21□□□□□ -0.29
CUX1-221ENST00000622516 PRAMEF22A3QJZ6 481 aa13.21□□□□□ -0.29
CUX1-221ENST00000622516 ATF3P18847 181 aa13.21□□□□□ -0.29
CUX1-221ENST00000622516 KLHL34Q8N239 644 aa13.21□□□□□ -0.29
CUX1-221ENST00000622516 CHPF2Q9P2E5 772 aa13.21□□□□□ -0.29
CUX1-221ENST00000622516 USP35Q9P2H5 1018 aa13.21□□□□□ -0.29
CUX1-221ENST00000622516 RBM42Q9BTD8 480 aaKnown RBP13.2□□□□□ -0.3
CUX1-221ENST00000622516 GNAI2P04899 355 aa13.2□□□□□ -0.3
CUX1-221ENST00000622516 EIF4A1P60842 406 aaKnown RBP13.2□□□□□ -0.3
CUX1-221ENST00000622516 PLEKHO1Q53GL0 409 aaPredicted RBP13.2□□□□□ -0.3
CUX1-221ENST00000622516 LRRFIP2Q9Y608 721 aaKnown RBP13.2□□□□□ -0.3
CUX1-221ENST00000622516 CHRNA2Q15822 529 aa13.2□□□□□ -0.3
CUX1-221ENST00000622516 TMEM94Q12767 1356 aa13.19□□□□□ -0.3
CUX1-221ENST00000622516 C1orf141Q5JVX7 400 aa13.19□□□□□ -0.3
CUX1-221ENST00000622516 C1orf167Q5SNV9 1468 aa13.19□□□□□ -0.3
CUX1-221ENST00000622516 NLRP2Q9NX02 1062 aa13.19□□□□□ -0.3
CUX1-221ENST00000622516 AKAP4Q5JQC9 854 aa13.18□□□□□ -0.3
CUX1-221ENST00000622516 TTC22Q5TAA0 569 aa13.18□□□□□ -0.3
CUX1-221ENST00000622516 USP44Q9H0E7 712 aa13.18□□□□□ -0.3
CUX1-221ENST00000622516 ANTXR1Q9H6X2 564 aa13.18□□□□□ -0.3
CUX1-221ENST00000622516 CEMIPQ8WUJ3 1361 aa13.18□□□□□ -0.3
CUX1-221ENST00000622516 ARXQ96QS3 562 aa13.18□□□□□ -0.3
CUX1-221ENST00000622516 FOXD4L1Q9NU39 408 aa13.18□□□□□ -0.3
CUX1-221ENST00000622516 PXDNQ92626 1479 aa13.18□□□□□ -0.3
CUX1-221ENST00000622516 PI4KAP2A4QPH2 592 aa13.17□□□□□ -0.3
CUX1-221ENST00000622516 SDSP20132 328 aa13.17□□□□□ -0.3
CUX1-221ENST00000622516 PI4KAP1Q8N8J0 262 aa13.17□□□□□ -0.3
CUX1-221ENST00000622516 RNMTO43148 476 aaKnown RBP13.17□□□□□ -0.3
CUX1-221ENST00000622516 HMMRO75330 724 aa13.17□□□□□ -0.3
CUX1-221ENST00000622516 CDC45O75419 566 aa13.17□□□□□ -0.3
CUX1-221ENST00000622516 CD2BP2O95400 341 aaKnown RBP13.17□□□□□ -0.3
CUX1-221ENST00000622516 KIF2CQ99661 725 aa13.17□□□□□ -0.3
CUX1-221ENST00000622516 RBM25P49756 843 aaKnown RBP13.16□□□□□ -0.3
CUX1-221ENST00000622516 SLC39A6Q13433 755 aa13.16□□□□□ -0.3
CUX1-221ENST00000622516 PROSER3Q2NL68 480 aa13.16□□□□□ -0.3
CUX1-221ENST00000622516 NBPF7P0C2Y1 421 aaPredicted RBP13.16□□□□□ -0.3
CUX1-221ENST00000622516 CSB-PGBD3P0DP91 1061 aa13.16□□□□□ -0.3
CUX1-221ENST00000622516 DNAJC5Q9H3Z4 198 aa13.16□□□□□ -0.3
CUX1-221ENST00000622516 LRRC37A3O60309 1634 aa13.15□□□□□ -0.3
CUX1-221ENST00000622516 USP54Q70EL1 1684 aa13.15□□□□□ -0.3
CUX1-221ENST00000622516 HSCBQ8IWL3 235 aa13.15□□□□□ -0.3
CUX1-221ENST00000622516 GNAI3P08754 354 aa13.15□□□□□ -0.3
CUX1-221ENST00000622516 UBTFL1P0CB47 393 aaPredicted RBP13.15□□□□□ -0.3
CUX1-221ENST00000622516 AMOTQ4VCS5 1084 aa13.15□□□□□ -0.3
CUX1-221ENST00000622516 IL1RAPL2Q9NP60 686 aa13.15□□□□□ -0.3
CUX1-221ENST00000622516 ERBB3P21860 1342 aa13.15□□□□□ -0.3
CUX1-221ENST00000622516 BABAM1Q9NWV8 329 aa13.14□□□□□ -0.31
CUX1-221ENST00000622516 RGPD5Q99666 1765 aa13.14□□□□□ -0.31
CUX1-221ENST00000622516 ATP8B2P98198 1209 aa13.14□□□□□ -0.31
CUX1-221ENST00000622516 AIMP1Q12904 312 aaKnown RBP13.14□□□□□ -0.31
CUX1-221ENST00000622516 SRCIN1Q9C0H9 1055 aa13.13□□□□□ -0.31
CUX1-221ENST00000622516 PDE1AP54750 535 aa13.13□□□□□ -0.31
CUX1-221ENST00000622516 RAPGEF4Q8WZA2 1011 aa13.13□□□□□ -0.31
CUX1-221ENST00000622516 FAM208AQ9UK61 1670 aaKnown RBP13.12□□□□□ -0.31
CUX1-221ENST00000622516 PIP4K2AP48426 406 aaPredicted RBP13.12□□□□□ -0.31
CUX1-221ENST00000622516 GSE1Q14687 1217 aa13.12□□□□□ -0.31
CUX1-221ENST00000622516 PPP1R42Q7Z4L9 355 aa13.12□□□□□ -0.31
CUX1-221ENST00000622516 NFATC2IPQ8NCF5 419 aa13.12□□□□□ -0.31
CUX1-221ENST00000622516 LRRCC1Q9C099 1032 aa13.12□□□□□ -0.31
CUX1-221ENST00000622516 GIGYF1O75420 1035 aaPredicted RBP13.12□□□□□ -0.31
CUX1-221ENST00000622516 DNAAF4Q8WXU2 420 aa13.12□□□□□ -0.31
CUX1-221ENST00000622516 MST1RQ04912 1400 aa13.11□□□□□ -0.31
CUX1-221ENST00000622516 SURF6O75683 361 aaKnown RBP13.11□□□□□ -0.31
CUX1-221ENST00000622516 HSP90AB1P08238 724 aaKnown RBP13.11□□□□□ -0.31
CUX1-221ENST00000622516 CWF19L2Q2TBE0 894 aaKnown RBP13.11□□□□□ -0.31
CUX1-221ENST00000622516 NUTM1Q86Y26 1132 aa13.11□□□□□ -0.31
CUX1-221ENST00000622516 SRGAP3O43295 1099 aa13.11□□□□□ -0.31
CUX1-221ENST00000622516 BEND3Q5T5X7 828 aa13.11□□□□□ -0.31
CUX1-221ENST00000622516 RILPL2Q969X0 211 aa13.11□□□□□ -0.31
CUX1-221ENST00000622516 MAP3K2Q9Y2U5 619 aa13.11□□□□□ -0.31
CUX1-221ENST00000622516 SLIT3O75094 1523 aa13.1□□□□□ -0.31
CUX1-221ENST00000622516 TRIM6-TRIM34B2RNG4 842 aa13.1□□□□□ -0.31
CUX1-221ENST00000622516 TULP1O00294 542 aaPredicted RBP13.1□□□□□ -0.31
CUX1-221ENST00000622516 MAP4K4O95819 1239 aaPredicted RBP13.1□□□□□ -0.31
CUX1-221ENST00000622516 MYL6BP14649 208 aa13.1□□□□□ -0.31
CUX1-221ENST00000622516 STRCP1A6NGW2 1772 aa13.1□□□□□ -0.31
CUX1-221ENST00000622516 HSP90AA1P07900 732 aaKnown RBP13.1□□□□□ -0.31
CUX1-221ENST00000622516 DBF4Q9UBU7 674 aaPredicted RBP13.1□□□□□ -0.31
CUX1-221ENST00000622516 MED1Q15648 1581 aaPredicted RBP13.1□□□□□ -0.31
CUX1-221ENST00000622516 TRPM3Q9HCF6 1732 aaPredicted RBP13.1□□□□□ -0.31
CUX1-221ENST00000622516 CADPS2Q86UW7 1296 aa13.09□□□□□ -0.31
CUX1-221ENST00000622516 USP26Q9BXU7 913 aa13.09□□□□□ -0.31
CUX1-221ENST00000622516 ADCY9O60503 1353 aa13.09□□□□□ -0.31
CUX1-221ENST00000622516 MX1P20591 662 aa13.08□□□□□ -0.31
CUX1-221ENST00000622516 UNC5CLQ8IV45 518 aa13.08□□□□□ -0.31
CUX1-221ENST00000622516 SOS1Q07889 1333 aaPredicted RBP13.08□□□□□ -0.32
CUX1-221ENST00000622516 TATP17735 454 aaPredicted RBP13.08□□□□□ -0.32
CUX1-221ENST00000622516 IBTKQ9P2D0 1353 aaPredicted RBP13.07□□□□□ -0.32
CUX1-221ENST00000622516 NPHP3Q7Z494 1330 aa13.07□□□□□ -0.32
CUX1-221ENST00000622516 CACNA1FO60840 1977 aa13.07□□□□□ -0.32
CUX1-221ENST00000622516 ZNF790Q6PG37 636 aa13.07□□□□□ -0.32
CUX1-221ENST00000622516 C9orf78Q9NZ63 289 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms