RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, human

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLIP1-219	ENST00000620786	MBD3	O95983	291 aa		13.41	□□□□□ -0.26
CLIP1-219	ENST00000620786	SLF2	Q8IX21	1173 aa		13.41	□□□□□ -0.26
CLIP1-219	ENST00000620786	NOS1	P29475	1434 aa		13.41	□□□□□ -0.26
CLIP1-219	ENST00000620786	ARGLU1	Q9NWB6	273 aa	Predicted RBP	13.41	□□□□□ -0.26
CLIP1-219	ENST00000620786	KIF1BP	Q96EK5	621 aa		13.41	□□□□□ -0.26
CLIP1-219	ENST00000620786	EXOC6B	Q9Y2D4	811 aa		13.41	□□□□□ -0.26
CLIP1-219	ENST00000620786	SERPINC1	P01008	464 aa		13.41	□□□□□ -0.26
CLIP1-219	ENST00000620786	MYCN	P04198	464 aa	Predicted RBP	13.41	□□□□□ -0.26
CLIP1-219	ENST00000620786	TMEM57	Q8N5G2	664 aa		13.41	□□□□□ -0.26
CLIP1-219	ENST00000620786	HYPK	Q9NX55	129 aa		13.41	□□□□□ -0.26
CLIP1-219	ENST00000620786	CHRNA2	Q15822	529 aa		13.4	□□□□□ -0.26
CLIP1-219	ENST00000620786	IFNL2	Q8IZJ0	200 aa		13.4	□□□□□ -0.26
CLIP1-219	ENST00000620786	ZBTB3	Q9H5J0	574 aa		13.4	□□□□□ -0.26
CLIP1-219	ENST00000620786	RAB11FIP3	O75154	756 aa		13.4	□□□□□ -0.26
CLIP1-219	ENST00000620786	CCDC96	Q2M329	555 aa		13.4	□□□□□ -0.26
CLIP1-219	ENST00000620786	CCDC39	Q9UFE4	941 aa		13.4	□□□□□ -0.26
CLIP1-219	ENST00000620786	ST5	P78524	1137 aa		13.4	□□□□□ -0.26
CLIP1-219	ENST00000620786	MAP3K12	Q12852	859 aa		13.4	□□□□□ -0.26
CLIP1-219	ENST00000620786	ANKRD24	Q8TF21	1146 aa		13.4	□□□□□ -0.26
CLIP1-219	ENST00000620786	TEX35	Q5T0J7	233 aa		13.4	□□□□□ -0.26
CLIP1-219	ENST00000620786	ABCC5	O15440	1437 aa		13.4	□□□□□ -0.26
CLIP1-219	ENST00000620786	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.4	□□□□□ -0.27
CLIP1-219	ENST00000620786	DEF6	Q9H4E7	631 aa		13.4	□□□□□ -0.27
CLIP1-219	ENST00000620786	SEPT11	Q9NVA2	429 aa	Known RBP	13.4	□□□□□ -0.27
CLIP1-219	ENST00000620786	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.39	□□□□□ -0.27
CLIP1-219	ENST00000620786	NAPB	Q9H115	298 aa		13.39	□□□□□ -0.27
CLIP1-219	ENST00000620786		A0A087WZG4	1122 aa		13.39	□□□□□ -0.27
CLIP1-219	ENST00000620786	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.39	□□□□□ -0.27
CLIP1-219	ENST00000620786	WDR33	Q9C0J8	1336 aa	Known RBP	13.39	□□□□□ -0.27
CLIP1-219	ENST00000620786	DDX46	Q7L014	1031 aa	Known RBP	13.39	□□□□□ -0.27
CLIP1-219	ENST00000620786	NASP	P49321	788 aa	Predicted RBP	13.38	□□□□□ -0.27
CLIP1-219	ENST00000620786	CEP57L1	Q8IYX8	460 aa		13.38	□□□□□ -0.27
CLIP1-219	ENST00000620786	TNMD	Q9H2S6	317 aa		13.38	□□□□□ -0.27
CLIP1-219	ENST00000620786	BOLA2	Q9H3K6	86 aa		13.38	□□□□□ -0.27
CLIP1-219	ENST00000620786	SKIDA1	Q1XH10	827 aa		13.38	□□□□□ -0.27
CLIP1-219	ENST00000620786	DNAAF4	Q8WXU2	420 aa		13.38	□□□□□ -0.27
CLIP1-219	ENST00000620786	KRT85	P78386	507 aa		13.38	□□□□□ -0.27
CLIP1-219	ENST00000620786	PPFIBP1	Q86W92	1011 aa		13.38	□□□□□ -0.27
CLIP1-219	ENST00000620786	CAST	P20810	708 aa	Known RBP	13.38	□□□□□ -0.27
CLIP1-219	ENST00000620786	C8orf37	Q96NL8	207 aa		13.38	□□□□□ -0.27
CLIP1-219	ENST00000620786	TEX14	Q8IWB6	1497 aa		13.38	□□□□□ -0.27
CLIP1-219	ENST00000620786	TTC21B	Q7Z4L5	1316 aa		13.37	□□□□□ -0.27
CLIP1-219	ENST00000620786	PPP4R3A	Q6IN85	833 aa		13.37	□□□□□ -0.27
CLIP1-219	ENST00000620786	PPP1R42	Q7Z4L9	355 aa		13.37	□□□□□ -0.27
CLIP1-219	ENST00000620786	CUL5	Q93034	780 aa		13.37	□□□□□ -0.27
CLIP1-219	ENST00000620786		U3KPZ7	1027 aa	Predicted RBP	13.37	□□□□□ -0.27
CLIP1-219	ENST00000620786	NCOA1	Q15788	1441 aa		13.37	□□□□□ -0.27
CLIP1-219	ENST00000620786		K7ELQ4	463 aa	Predicted RBP	13.37	□□□□□ -0.27
CLIP1-219	ENST00000620786	TRIM21	P19474	475 aa	Known RBP	13.37	□□□□□ -0.27
CLIP1-219	ENST00000620786	DBF4	Q9UBU7	674 aa	Predicted RBP	13.37	□□□□□ -0.27
CLIP1-219	ENST00000620786	CCP110	O43303	1012 aa		13.37	□□□□□ -0.27
CLIP1-219	ENST00000620786	SMARCA5	O60264	1052 aa	Predicted RBP	13.37	□□□□□ -0.27
CLIP1-219	ENST00000620786	RANBP6	O60518	1105 aa	Known RBP	13.37	□□□□□ -0.27
CLIP1-219	ENST00000620786	MX1	P20591	662 aa		13.37	□□□□□ -0.27
CLIP1-219	ENST00000620786	CEP131	Q9UPN4	1083 aa		13.37	□□□□□ -0.27
CLIP1-219	ENST00000620786	FANCI	Q9NVI1	1328 aa		13.37	□□□□□ -0.27
CLIP1-219	ENST00000620786	CDC5L	Q99459	802 aa	Known RBP	13.37	□□□□□ -0.27
CLIP1-219	ENST00000620786	LUC7L	Q9NQ29	371 aa	Known RBP	13.37	□□□□□ -0.27
CLIP1-219	ENST00000620786	DES	P17661	470 aa		13.36	□□□□□ -0.27
CLIP1-219	ENST00000620786	ACSBG1	Q96GR2	724 aa		13.36	□□□□□ -0.27
CLIP1-219	ENST00000620786	SPATA32	Q96LK8	384 aa		13.36	□□□□□ -0.27
CLIP1-219	ENST00000620786	ACE	P12821	1306 aa		13.36	□□□□□ -0.27
CLIP1-219	ENST00000620786	HSP90B2P	Q58FF3	399 aa		13.36	□□□□□ -0.27
CLIP1-219	ENST00000620786	GLRX3	O76003	335 aa	Known RBP	13.36	□□□□□ -0.27
CLIP1-219	ENST00000620786	NEBL	O76041	1014 aa		13.36	□□□□□ -0.27
CLIP1-219	ENST00000620786	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.36	□□□□□ -0.27
CLIP1-219	ENST00000620786		F6X3S4	739 aa		13.36	□□□□□ -0.27
CLIP1-219	ENST00000620786	SLFN5	Q08AF3	891 aa		13.36	□□□□□ -0.27
CLIP1-219	ENST00000620786	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.36	□□□□□ -0.27
CLIP1-219	ENST00000620786	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.36	□□□□□ -0.27
CLIP1-219	ENST00000620786	DDX11	Q96FC9	970 aa		13.35	□□□□□ -0.27
CLIP1-219	ENST00000620786	CCDC8	Q9H0W5	538 aa	Predicted RBP	13.35	□□□□□ -0.27
CLIP1-219	ENST00000620786	MAP3K2	Q9Y2U5	619 aa		13.35	□□□□□ -0.27
CLIP1-219	ENST00000620786	TRAK2	O60296	914 aa		13.35	□□□□□ -0.27
CLIP1-219	ENST00000620786	ZNF608	Q9ULD9	1512 aa	Predicted RBP	13.35	□□□□□ -0.27
CLIP1-219	ENST00000620786	NOM1	Q5C9Z4	860 aa	Known RBP	13.35	□□□□□ -0.27
CLIP1-219	ENST00000620786	CWC25	Q9NXE8	425 aa	Predicted RBP	13.35	□□□□□ -0.27
CLIP1-219	ENST00000620786	ABCC11	Q96J66	1382 aa		13.35	□□□□□ -0.27
CLIP1-219	ENST00000620786	CCDC192	P0DO97	292 aa		13.34	□□□□□ -0.27
CLIP1-219	ENST00000620786	URB2	Q14146	1524 aa	Known RBP	13.34	□□□□□ -0.27
CLIP1-219	ENST00000620786	NFKBIB	Q15653	356 aa		13.34	□□□□□ -0.27
CLIP1-219	ENST00000620786	ALDH1L2	Q3SY69	923 aa		13.34	□□□□□ -0.27
CLIP1-219	ENST00000620786	NBPF6	Q5VWK0	638 aa		13.34	□□□□□ -0.27
CLIP1-219	ENST00000620786	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.34	□□□□□ -0.27
CLIP1-219	ENST00000620786	NBPF4	Q96M43	638 aa		13.34	□□□□□ -0.27
CLIP1-219	ENST00000620786	FEZ1	Q99689	392 aa		13.34	□□□□□ -0.27
CLIP1-219	ENST00000620786	EHMT1	Q9H9B1	1298 aa		13.34	□□□□□ -0.27
CLIP1-219	ENST00000620786	CFAP45	Q9UL16	551 aa		13.34	□□□□□ -0.27
CLIP1-219	ENST00000620786	CTCFL	Q8NI51	663 aa	Predicted RBP	13.34	□□□□□ -0.27
CLIP1-219	ENST00000620786	LRRFIP2	Q9Y608	721 aa	Known RBP	13.34	□□□□□ -0.27
CLIP1-219	ENST00000620786	DHX29	Q7Z478	1369 aa	Known RBP	13.34	□□□□□ -0.27
CLIP1-219	ENST00000620786	PRPF40B	Q6NWY9	871 aa	Known RBP	13.34	□□□□□ -0.27
CLIP1-219	ENST00000620786	TXLNB	Q8N3L3	684 aa		13.34	□□□□□ -0.27
CLIP1-219	ENST00000620786	SPC24	Q8NBT2	197 aa		13.34	□□□□□ -0.27
CLIP1-219	ENST00000620786	ERCC4	Q92889	916 aa	Predicted RBP	13.34	□□□□□ -0.27
CLIP1-219	ENST00000620786	IQCA1	Q86XH1	822 aa		13.33	□□□□□ -0.28
CLIP1-219	ENST00000620786	DNAI2	Q9GZS0	605 aa		13.33	□□□□□ -0.28
CLIP1-219	ENST00000620786	ATP5J2-PTCD1	G3V325	749 aa		13.33	□□□□□ -0.28
CLIP1-219	ENST00000620786	MYO1B	O43795	1136 aa		13.33	□□□□□ -0.28
CLIP1-219	ENST00000620786	ATP6V1A	P38606	617 aa		13.33	□□□□□ -0.28

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