RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 TMPOP42166 694 aaKnown RBP13.17□□□□□ -0.3
UPF3A-212ENST00000619079 INTS3Q68E01 1043 aaKnown RBP13.17□□□□□ -0.3
UPF3A-212ENST00000619079 DDX17Q92841 729 aaKnown RBP13.17□□□□□ -0.3
UPF3A-212ENST00000619079 CASC1Q6TDU7 716 aa13.16□□□□□ -0.3
UPF3A-212ENST00000619079 ZNF710Q8N1W2 664 aa13.16□□□□□ -0.3
UPF3A-212ENST00000619079 AK9Q5TCS8 1911 aa13.16□□□□□ -0.3
UPF3A-212ENST00000619079 PSME1Q06323 249 aa13.15□□□□□ -0.3
UPF3A-212ENST00000619079 PKP1Q13835 747 aa13.15□□□□□ -0.3
UPF3A-212ENST00000619079 NOLC1Q14978 699 aaKnown RBP eCLIP13.15□□□□□ -0.3
UPF3A-212ENST00000619079 ARHGAP45Q92619 1136 aa13.15□□□□□ -0.3
UPF3A-212ENST00000619079 SLC12A5Q9H2X9 1139 aa13.15□□□□□ -0.3
UPF3A-212ENST00000619079 FBXO41Q8TF61 875 aa13.15□□□□□ -0.3
UPF3A-212ENST00000619079 PUS7Q96PZ0 661 aaKnown RBP13.15□□□□□ -0.3
UPF3A-212ENST00000619079 USP26Q9BXU7 913 aa13.15□□□□□ -0.3
UPF3A-212ENST00000619079 ZBTB7BO15156 539 aaPredicted RBP13.14□□□□□ -0.31
UPF3A-212ENST00000619079 CBX1P83916 185 aa13.14□□□□□ -0.31
UPF3A-212ENST00000619079 RNF214Q8ND24 703 aa13.14□□□□□ -0.31
UPF3A-212ENST00000619079 TRIM35Q9UPQ4 493 aa13.14□□□□□ -0.31
UPF3A-212ENST00000619079 NPHP3Q7Z494 1330 aa13.14□□□□□ -0.31
UPF3A-212ENST00000619079 ACEP12821 1306 aa13.14□□□□□ -0.31
UPF3A-212ENST00000619079 CHAF1AQ13111 956 aaPredicted RBP13.14□□□□□ -0.31
UPF3A-212ENST00000619079 FKBP5Q13451 457 aaPredicted RBP13.14□□□□□ -0.31
UPF3A-212ENST00000619079 PLEKHF1Q96S99 279 aa13.14□□□□□ -0.31
UPF3A-212ENST00000619079 DIAPH3Q9NSV4 1193 aa13.14□□□□□ -0.31
UPF3A-212ENST00000619079 SPTLC3Q9NUV7 552 aa13.14□□□□□ -0.31
UPF3A-212ENST00000619079 ROBO1Q9Y6N7 1651 aa13.14□□□□□ -0.31
UPF3A-212ENST00000619079 ZDHHC9Q9Y397 364 aa13.13□□□□□ -0.31
UPF3A-212ENST00000619079 HDGFL2Q7Z4V5 671 aaPredicted RBP13.13□□□□□ -0.31
UPF3A-212ENST00000619079 KLHL34Q8N239 644 aa13.13□□□□□ -0.31
UPF3A-212ENST00000619079 PDCL2Q8N4E4 241 aa13.13□□□□□ -0.31
UPF3A-212ENST00000619079 RGPD8O14715 1765 aaPredicted RBP13.12□□□□□ -0.31
UPF3A-212ENST00000619079 PLEKHG3A1L390 1219 aa13.12□□□□□ -0.31
UPF3A-212ENST00000619079 REC8O95072 547 aa13.12□□□□□ -0.31
UPF3A-212ENST00000619079 MCM2P49736 904 aa13.12□□□□□ -0.31
UPF3A-212ENST00000619079 LMOD2Q6P5Q4 547 aa13.12□□□□□ -0.31
UPF3A-212ENST00000619079 TERF2IPQ9NYB0 399 aa13.12□□□□□ -0.31
UPF3A-212ENST00000619079 GSPT1P15170 499 aaKnown RBP13.12□□□□□ -0.31
UPF3A-212ENST00000619079 TTC22Q5TAA0 569 aa13.12□□□□□ -0.31
UPF3A-212ENST00000619079 FEZ1Q99689 392 aa13.12□□□□□ -0.31
UPF3A-212ENST00000619079 KRT28Q7Z3Y7 464 aa13.11□□□□□ -0.31
UPF3A-212ENST00000619079 ZGPATQ8N5A5 531 aaKnown RBP13.11□□□□□ -0.31
UPF3A-212ENST00000619079 ITSN1Q15811 1721 aa13.11□□□□□ -0.31
UPF3A-212ENST00000619079 TPM3P06753 285 aa13.11□□□□□ -0.31
UPF3A-212ENST00000619079 ANKRD36BQ8N2N9 1353 aa13.1□□□□□ -0.31
UPF3A-212ENST00000619079 ATP2B3Q16720 1220 aa13.1□□□□□ -0.31
UPF3A-212ENST00000619079 PLEKHM2Q8IWE5 1019 aa13.1□□□□□ -0.31
UPF3A-212ENST00000619079 BCL2L12Q9HB09 334 aa13.1□□□□□ -0.31
UPF3A-212ENST00000619079 HSPA1LP34931 641 aa13.1□□□□□ -0.31
UPF3A-212ENST00000619079 BBXQ8WY36 941 aaPredicted RBP13.1□□□□□ -0.31
UPF3A-212ENST00000619079 BRD1O95696 1058 aa13.09□□□□□ -0.31
UPF3A-212ENST00000619079 NSFL1CQ9UNZ2 370 aaKnown RBP13.09□□□□□ -0.31
UPF3A-212ENST00000619079 KIF1AQ12756 1690 aa13.09□□□□□ -0.31
UPF3A-212ENST00000619079 KIF24Q5T7B8 1368 aa13.09□□□□□ -0.31
UPF3A-212ENST00000619079 U2SURPO15042 1029 aaKnown RBP13.09□□□□□ -0.31
UPF3A-212ENST00000619079 ABCC4O15439 1325 aa13.08□□□□□ -0.32
UPF3A-212ENST00000619079 TOPAZ1Q8N9V7 1692 aa13.08□□□□□ -0.32
UPF3A-212ENST00000619079 SIRT2Q8IXJ6 389 aa13.08□□□□□ -0.32
UPF3A-212ENST00000619079 ANKRD7Q92527 254 aa13.08□□□□□ -0.32
UPF3A-212ENST00000619079 A0A1W2PP64 1363 aa13.08□□□□□ -0.32
UPF3A-212ENST00000619079 PDE4CQ08493 712 aa13.08□□□□□ -0.32
UPF3A-212ENST00000619079 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.08□□□□□ -0.32
UPF3A-212ENST00000619079 COL3A1P02461 1466 aaPredicted RBP13.07□□□□□ -0.32
UPF3A-212ENST00000619079 LRRC59Q96AG4 307 aaKnown RBP13.07□□□□□ -0.32
UPF3A-212ENST00000619079 INTS4Q96HW7 963 aaKnown RBP13.07□□□□□ -0.32
UPF3A-212ENST00000619079 C1orf115Q9H7X2 142 aa13.07□□□□□ -0.32
UPF3A-212ENST00000619079 SOS2Q07890 1332 aaPredicted RBP13.07□□□□□ -0.32
UPF3A-212ENST00000619079 TSC1Q92574 1164 aa13.07□□□□□ -0.32
UPF3A-212ENST00000619079 DCTPP1Q9H773 170 aa13.07□□□□□ -0.32
UPF3A-212ENST00000619079 GABPB1Q06547 395 aaPredicted RBP13.06□□□□□ -0.32
UPF3A-212ENST00000619079 OGFRQ9NZT2 677 aa13.06□□□□□ -0.32
UPF3A-212ENST00000619079 USP6P35125 1406 aa13.06□□□□□ -0.32
UPF3A-212ENST00000619079 CTIFO43310 598 aaKnown RBP13.05□□□□□ -0.32
UPF3A-212ENST00000619079 ADCY5O95622 1261 aa13.05□□□□□ -0.32
UPF3A-212ENST00000619079 GTF2E1P29083 439 aaPredicted RBP13.05□□□□□ -0.32
UPF3A-212ENST00000619079 SYCP1Q15431 976 aa13.05□□□□□ -0.32
UPF3A-212ENST00000619079 MRPL50Q8N5N7 158 aaKnown RBP13.05□□□□□ -0.32
UPF3A-212ENST00000619079 ABTB2Q8N961 1025 aa13.05□□□□□ -0.32
UPF3A-212ENST00000619079 API5Q9BZZ5 524 aaKnown RBP13.05□□□□□ -0.32
UPF3A-212ENST00000619079 USP25Q9UHP3 1055 aa13.05□□□□□ -0.32
UPF3A-212ENST00000619079 ERC2O15083 957 aa13.05□□□□□ -0.32
UPF3A-212ENST00000619079 PHLPP1O60346 1717 aa13.05□□□□□ -0.32
UPF3A-212ENST00000619079 CPSF1Q10570 1443 aaKnown RBP13.05□□□□□ -0.32
UPF3A-212ENST00000619079 CUL4AQ13619 759 aa13.05□□□□□ -0.32
UPF3A-212ENST00000619079 CCDC183Q5T5S1 534 aa13.05□□□□□ -0.32
UPF3A-212ENST00000619079 NUTM2GQ5VZR2 741 aa13.05□□□□□ -0.32
UPF3A-212ENST00000619079 AHDC1Q5TGY3 1603 aaPredicted RBP13.05□□□□□ -0.32
UPF3A-212ENST00000619079 TMX3Q96JJ7 454 aa13.04□□□□□ -0.32
UPF3A-212ENST00000619079 TTC12Q9H892 705 aaPredicted RBP13.04□□□□□ -0.32
UPF3A-212ENST00000619079 PXDNQ92626 1479 aa13.04□□□□□ -0.32
UPF3A-212ENST00000619079 CD163L1Q9NR16 1453 aa13.04□□□□□ -0.32
UPF3A-212ENST00000619079 NHSL1Q5SYE7 1610 aa13.04□□□□□ -0.32
UPF3A-212ENST00000619079 GOLGA6L6A8MZA4 724 aa13.04□□□□□ -0.32
UPF3A-212ENST00000619079 JARID2Q92833 1246 aaPredicted RBP13.04□□□□□ -0.32
UPF3A-212ENST00000619079 HAP1P54257 671 aaPredicted RBP13.03□□□□□ -0.32
UPF3A-212ENST00000619079 KIAA1524Q8TCG1 905 aa13.03□□□□□ -0.32
UPF3A-212ENST00000619079 ZNF830Q96NB3 372 aaPredicted RBP13.03□□□□□ -0.32
UPF3A-212ENST00000619079 SPATA31A3Q5VYP0 1347 aa13.03□□□□□ -0.32
UPF3A-212ENST00000619079 TTC21BQ7Z4L5 1316 aa13.03□□□□□ -0.32
UPF3A-212ENST00000619079 SPDYE4A6NLX3 237 aa13.03□□□□□ -0.32
UPF3A-212ENST00000619079 SDSP20132 328 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms