RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 BTBD11A6QL63 1104 aa19.15■□□□□ 0.66
CD48-203ENST00000613788 E9PSI1 815 aa19.15■□□□□ 0.66
CD48-203ENST00000613788 MYH16Q9H6N6 1097 aa19.15■□□□□ 0.66
CD48-203ENST00000613788 CHL1O00533 1208 aa19.14■□□□□ 0.65
CD48-203ENST00000613788 MRC1P22897 1456 aa19.13■□□□□ 0.65
CD48-203ENST00000613788 ZNF853P0CG23 659 aa19.13■□□□□ 0.65
CD48-203ENST00000613788 PIGBQ92521 554 aa19.13■□□□□ 0.65
CD48-203ENST00000613788 TSPYL4Q9UJ04 414 aa19.13■□□□□ 0.65
CD48-203ENST00000613788 KCNQ2O43526 872 aa19.12■□□□□ 0.65
CD48-203ENST00000613788 SLFN5Q08AF3 891 aa19.11■□□□□ 0.65
CD48-203ENST00000613788 CDCA7LQ96GN5 454 aa19.11■□□□□ 0.65
CD48-203ENST00000613788 BCL11BQ9C0K0 894 aaPredicted RBP19.11■□□□□ 0.65
CD48-203ENST00000613788 MIS18AQ9NYP9 233 aa19.11■□□□□ 0.65
CD48-203ENST00000613788 SPINK5Q9NQ38 1064 aaPredicted RBP19.1■□□□□ 0.65
CD48-203ENST00000613788 TOGARAM1Q9Y4F4 1720 aa19.1■□□□□ 0.65
CD48-203ENST00000613788 ZNF790Q6PG37 636 aa19.1■□□□□ 0.65
CD48-203ENST00000613788 TTC5Q8N0Z6 440 aa19.1■□□□□ 0.65
CD48-203ENST00000613788 MBIPQ9NS73 344 aa19.1■□□□□ 0.65
CD48-203ENST00000613788 DOT1LQ8TEK3 1739 aa19.09■□□□□ 0.65
CD48-203ENST00000613788 VIRMAQ69YN4 1812 aaKnown RBP19.08■□□□□ 0.65
CD48-203ENST00000613788 TRIM37O94972 964 aa19.08■□□□□ 0.64
CD48-203ENST00000613788 SLC39A6Q13433 755 aa19.08■□□□□ 0.64
CD48-203ENST00000613788 TRMT2AQ8IZ69 625 aaKnown RBP19.08■□□□□ 0.64
CD48-203ENST00000613788 SMARCC1Q92922 1105 aaPredicted RBP19.08■□□□□ 0.64
CD48-203ENST00000613788 KAT6BQ8WYB5 2073 aa19.07■□□□□ 0.64
CD48-203ENST00000613788 TSR2Q969E8 191 aaKnown RBP19.07■□□□□ 0.64
CD48-203ENST00000613788 ATG3Q9NT62 314 aa19.07■□□□□ 0.64
CD48-203ENST00000613788 ASAP1Q9ULH1 1129 aa19.07■□□□□ 0.64
CD48-203ENST00000613788 FANCIQ9NVI1 1328 aa19.07■□□□□ 0.64
CD48-203ENST00000613788 ITGB4P16144 1822 aa19.06■□□□□ 0.64
CD48-203ENST00000613788 SIPA1L3O60292 1781 aaPredicted RBP19.06■□□□□ 0.64
CD48-203ENST00000613788 NHSQ6T4R5 1651 aa19.05■□□□□ 0.64
CD48-203ENST00000613788 DUSP27Q5VZP5 1158 aa19.05■□□□□ 0.64
CD48-203ENST00000613788 KCNQ3O43525 872 aa19.05■□□□□ 0.64
CD48-203ENST00000613788 PTF1AQ7RTS3 328 aa19.05■□□□□ 0.64
CD48-203ENST00000613788 EIF4A1P60842 406 aaKnown RBP19.04■□□□□ 0.64
CD48-203ENST00000613788 FMNL2Q96PY5 1086 aa19.04■□□□□ 0.64
CD48-203ENST00000613788 SBF2Q86WG5 1849 aa19.03■□□□□ 0.64
CD48-203ENST00000613788 PTCD1O75127 700 aaKnown RBP19.02■□□□□ 0.64
CD48-203ENST00000613788 ZNF496Q96IT1 587 aaPredicted RBP19.02■□□□□ 0.64
CD48-203ENST00000613788 EXOSC9Q06265 439 aaKnown RBP19.01■□□□□ 0.63
CD48-203ENST00000613788 RBM42Q9BTD8 480 aaKnown RBP19.01■□□□□ 0.63
CD48-203ENST00000613788 PALLDQ8WX93 1383 aa19.01■□□□□ 0.63
CD48-203ENST00000613788 APBA3O96018 575 aa19■□□□□ 0.63
CD48-203ENST00000613788 SF3B2Q13435 895 aaKnown RBP19■□□□□ 0.63
CD48-203ENST00000613788 VSIG10Q8N0Z9 540 aa19■□□□□ 0.63
CD48-203ENST00000613788 EP400Q96L91 3159 aa19■□□□□ 0.63
CD48-203ENST00000613788 KDM3BQ7LBC6 1761 aa19■□□□□ 0.63
CD48-203ENST00000613788 SNRPA1P09661 255 aaKnown RBP19■□□□□ 0.63
CD48-203ENST00000613788 CCDC125Q86Z20 511 aa19■□□□□ 0.63
CD48-203ENST00000613788 SOS1Q07889 1333 aaPredicted RBP18.99■□□□□ 0.63
CD48-203ENST00000613788 PLSCR1O15162 318 aa18.99■□□□□ 0.63
CD48-203ENST00000613788 C8orf58Q8NAV2 365 aa18.99■□□□□ 0.63
CD48-203ENST00000613788 TEX13AQ9BXU3 409 aaPredicted RBP18.99■□□□□ 0.63
CD48-203ENST00000613788 CHMP4AQ9BY43 222 aa18.99■□□□□ 0.63
CD48-203ENST00000613788 HEG1Q9ULI3 1381 aa18.99■□□□□ 0.63
CD48-203ENST00000613788 LOC102724428A0A0B4J2F2 783 aa18.98■□□□□ 0.63
CD48-203ENST00000613788 ELL2O00472 640 aaPredicted RBP18.98■□□□□ 0.63
CD48-203ENST00000613788 GIGYF1O75420 1035 aaPredicted RBP18.98■□□□□ 0.63
CD48-203ENST00000613788 HOXB7P09629 217 aa18.98■□□□□ 0.63
CD48-203ENST00000613788 CT47B1P0C2W7 299 aaPredicted RBP18.98■□□□□ 0.63
CD48-203ENST00000613788 SIK1P57059 783 aa18.98■□□□□ 0.63
CD48-203ENST00000613788 TWISTNBQ3B726 338 aaPredicted RBP18.98■□□□□ 0.63
CD48-203ENST00000613788 PAPPAQ13219 1627 aa18.98■□□□□ 0.63
CD48-203ENST00000613788 BTAF1O14981 1849 aa18.98■□□□□ 0.63
CD48-203ENST00000613788 KRT24Q2M2I5 525 aa18.97■□□□□ 0.63
CD48-203ENST00000613788 KCPQ6ZWJ8 1503 aa18.96■□□□□ 0.63
CD48-203ENST00000613788 HMGB2P26583 209 aaKnown RBP18.96■□□□□ 0.63
CD48-203ENST00000613788 ATP6V1AP38606 617 aa18.96■□□□□ 0.63
CD48-203ENST00000613788 TSPYL6Q8N831 410 aa18.96■□□□□ 0.63
CD48-203ENST00000613788 VAMP4O75379 141 aa18.95■□□□□ 0.62
CD48-203ENST00000613788 ZNF428Q96B54 188 aa18.95■□□□□ 0.62
CD48-203ENST00000613788 BAG6P46379 1132 aa18.94■□□□□ 0.62
CD48-203ENST00000613788 SLC27A3Q5K4L6 730 aa18.94■□□□□ 0.62
CD48-203ENST00000613788 SLC4A9Q96Q91 983 aa18.94■□□□□ 0.62
CD48-203ENST00000613788 CCNL1Q9UK58 526 aaPredicted RBP18.94■□□□□ 0.62
CD48-203ENST00000613788 UBR2Q8IWV8 1755 aa18.94■□□□□ 0.62
CD48-203ENST00000613788 STARD3NLO95772 234 aa18.93■□□□□ 0.62
CD48-203ENST00000613788 EIF2S2P20042 333 aaKnown RBP18.92■□□□□ 0.62
CD48-203ENST00000613788 HDGFL1Q5TGJ6 251 aa18.92■□□□□ 0.62
CD48-203ENST00000613788 ILDR2Q71H61 639 aa18.92■□□□□ 0.62
CD48-203ENST00000613788 DNAJC10Q8IXB1 793 aa18.92■□□□□ 0.62
CD48-203ENST00000613788 USP16Q9Y5T5 823 aa18.92■□□□□ 0.62
CD48-203ENST00000613788 PRAMEF22A3QJZ6 481 aa18.91■□□□□ 0.62
CD48-203ENST00000613788 TXNRD1Q16881 649 aa18.91■□□□□ 0.62
CD48-203ENST00000613788 CCDC30Q5VVM6 783 aa18.91■□□□□ 0.62
CD48-203ENST00000613788 TNS1Q9HBL0 1735 aaKnown RBP18.9■□□□□ 0.62
CD48-203ENST00000613788 CENPBP07199 599 aaPredicted RBP18.9■□□□□ 0.62
CD48-203ENST00000613788 ITPK1Q13572 414 aa18.9■□□□□ 0.62
CD48-203ENST00000613788 UPF1Q92900 1129 aaKnown RBP eCLIP18.9■□□□□ 0.62
CD48-203ENST00000613788 CYP19A1P11511 503 aaPredicted RBP18.89■□□□□ 0.61
CD48-203ENST00000613788 EN1Q05925 392 aaPredicted RBP18.89■□□□□ 0.61
CD48-203ENST00000613788 PROM2Q8N271 834 aa18.89■□□□□ 0.61
CD48-203ENST00000613788 CAMKK2Q96RR4 588 aa18.89■□□□□ 0.61
CD48-203ENST00000613788 STK31Q9BXU1 1019 aa18.89■□□□□ 0.61
CD48-203ENST00000613788 LY75O60449 1722 aa18.88■□□□□ 0.61
CD48-203ENST00000613788 KCNQ4P56696 695 aa18.88■□□□□ 0.61
CD48-203ENST00000613788 ALDH1L2Q3SY69 923 aa18.88■□□□□ 0.61
CD48-203ENST00000613788 NECTIN2Q92692 538 aa18.88■□□□□ 0.61
CD48-203ENST00000613788 LRRC4BQ9NT99 713 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms