RNA–Protein interactions for RNA: ENST00000610726.4

CSDE1-218, Transcript of cold shock domain containing E1, humanhuman

TSL 5 BASIC

Gene CSDE1, Length 4,312 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-218ENST00000610726 CLSTN1O94985 981 aa8.75□□□□□ -1.01
CSDE1-218ENST00000610726 KIAA2012Q0VF49 1180 aa8.75□□□□□ -1.01
CSDE1-218ENST00000610726 UBE3BQ7Z3V4 1068 aa8.75□□□□□ -1.01
CSDE1-218ENST00000610726 NFATC2IPQ8NCF5 419 aa8.75□□□□□ -1.01
CSDE1-218ENST00000610726 BICD2Q8TD16 824 aa8.75□□□□□ -1.01
CSDE1-218ENST00000610726 PLA2R1Q13018 1463 aa8.75□□□□□ -1.01
CSDE1-218ENST00000610726 MLH3Q9UHC1 1453 aa8.75□□□□□ -1.01
CSDE1-218ENST00000610726 PPP1R42Q7Z4L9 355 aa8.75□□□□□ -1.01
CSDE1-218ENST00000610726 MRPL50Q8N5N7 158 aaKnown RBP8.75□□□□□ -1.01
CSDE1-218ENST00000610726 UBAP1LF5GYI3 381 aa8.74□□□□□ -1.01
CSDE1-218ENST00000610726 SNRPA1P09661 255 aaKnown RBP8.74□□□□□ -1.01
CSDE1-218ENST00000610726 AKAP4Q5JQC9 854 aa8.74□□□□□ -1.01
CSDE1-218ENST00000610726 IP6K1Q92551 441 aa8.74□□□□□ -1.01
CSDE1-218ENST00000610726 METP08581 1390 aa8.74□□□□□ -1.01
CSDE1-218ENST00000610726 UPF3BQ9BZI7 483 aaKnown RBP8.74□□□□□ -1.01
CSDE1-218ENST00000610726 STK3Q13188 491 aa8.74□□□□□ -1.01
CSDE1-218ENST00000610726 METTL24Q5JXM2 366 aa8.74□□□□□ -1.01
CSDE1-218ENST00000610726 COPS6Q7L5N1 327 aa8.74□□□□□ -1.01
CSDE1-218ENST00000610726 ARHGAP45Q92619 1136 aa8.74□□□□□ -1.01
CSDE1-218ENST00000610726 TRIM34Q9BYJ4 488 aa8.74□□□□□ -1.01
CSDE1-218ENST00000610726 TRMT112Q9UI30 125 aaKnown RBP8.74□□□□□ -1.01
CSDE1-218ENST00000610726 TRPM2O94759 1503 aa8.74□□□□□ -1.01
CSDE1-218ENST00000610726 PREX2Q70Z35 1606 aa8.74□□□□□ -1.01
CSDE1-218ENST00000610726 GLRX3O76003 335 aaKnown RBP8.73□□□□□ -1.01
CSDE1-218ENST00000610726 ANKRD13DQ6ZTN6 518 aa8.73□□□□□ -1.01
CSDE1-218ENST00000610726 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.73□□□□□ -1.01
CSDE1-218ENST00000610726 IDH1O75874 414 aaKnown RBP8.73□□□□□ -1.01
CSDE1-218ENST00000610726 XAGE3Q8WTP9 111 aa8.73□□□□□ -1.01
CSDE1-218ENST00000610726 CYP46A1Q9Y6A2 500 aa8.73□□□□□ -1.01
CSDE1-218ENST00000610726 PIK3R4Q99570 1358 aa8.73□□□□□ -1.01
CSDE1-218ENST00000610726 EDC4Q6P2E9 1401 aaKnown RBP8.73□□□□□ -1.01
CSDE1-218ENST00000610726 SAMD1Q6SPF0 538 aaPredicted RBP8.73□□□□□ -1.01
CSDE1-218ENST00000610726 TSPOAP1O95153 1857 aa8.73□□□□□ -1.01
CSDE1-218ENST00000610726 PLEKHG3A1L390 1219 aa8.73□□□□□ -1.01
CSDE1-218ENST00000610726 RAB11FIP3O75154 756 aa8.73□□□□□ -1.01
CSDE1-218ENST00000610726 PPP1R1BQ9UD71 204 aaPredicted RBP8.73□□□□□ -1.01
CSDE1-218ENST00000610726 TRIM35Q9UPQ4 493 aa8.73□□□□□ -1.01
CSDE1-218ENST00000610726 ZFYVE9O95405 1425 aa8.73□□□□□ -1.01
CSDE1-218ENST00000610726 K7ELQ4 463 aaPredicted RBP8.72□□□□□ -1.01
CSDE1-218ENST00000610726 CHAF1AQ13111 956 aaPredicted RBP8.72□□□□□ -1.01
CSDE1-218ENST00000610726 ACSBG1Q96GR2 724 aa8.72□□□□□ -1.01
CSDE1-218ENST00000610726 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.72□□□□□ -1.019e-6■□□□□ 8.3
CSDE1-218ENST00000610726 GNL3LQ9NVN8 582 aaKnown RBP8.72□□□□□ -1.01
CSDE1-218ENST00000610726 MCM2P49736 904 aa8.72□□□□□ -1.01
CSDE1-218ENST00000610726 JAKMIP1Q96N16 626 aaKnown RBP8.72□□□□□ -1.01
CSDE1-218ENST00000610726 ABCF2Q9UG63 623 aa8.72□□□□□ -1.01
CSDE1-218ENST00000610726 BECN2A8MW95 431 aa8.72□□□□□ -1.01
CSDE1-218ENST00000610726 TOM1O60784 492 aa8.72□□□□□ -1.01
CSDE1-218ENST00000610726 TPM4P67936 248 aa8.72□□□□□ -1.01
CSDE1-218ENST00000610726 IFIT5Q13325 482 aaKnown RBP8.72□□□□□ -1.01
CSDE1-218ENST00000610726 MAGI2Q86UL8 1455 aa8.72□□□□□ -1.01
CSDE1-218ENST00000610726 ATP2B1P20020 1258 aa8.71□□□□□ -1.01
CSDE1-218ENST00000610726 IGHMBP2P38935 993 aaKnown RBP8.71□□□□□ -1.01
CSDE1-218ENST00000610726 BLOC1S2Q6QNY1 142 aa8.71□□□□□ -1.02
CSDE1-218ENST00000610726 PRDM15P57071 1507 aaPredicted RBP8.71□□□□□ -1.02
CSDE1-218ENST00000610726 FIBPO43427 364 aa8.71□□□□□ -1.02
CSDE1-218ENST00000610726 TRAK2O60296 914 aa8.71□□□□□ -1.02
CSDE1-218ENST00000610726 ZPR1O75312 459 aa8.71□□□□□ -1.02
CSDE1-218ENST00000610726 PRPF40AO75400 957 aaKnown RBP8.71□□□□□ -1.02
CSDE1-218ENST00000610726 NBPF6Q5VWK0 638 aa8.71□□□□□ -1.02
CSDE1-218ENST00000610726 NBPF4Q96M43 638 aa8.71□□□□□ -1.02
CSDE1-218ENST00000610726 C8orf37Q96NL8 207 aa8.71□□□□□ -1.02
CSDE1-218ENST00000610726 PHAXQ9H814 394 aaKnown RBP8.71□□□□□ -1.02
CSDE1-218ENST00000610726 IL2RBP14784 551 aa8.7□□□□□ -1.02
CSDE1-218ENST00000610726 HDAC1Q13547 482 aaPredicted RBP8.7□□□□□ -1.02
CSDE1-218ENST00000610726 SAFBQ15424 915 aaKnown RBP eCLIP8.7□□□□□ -1.02
CSDE1-218ENST00000610726 G2E3Q7L622 706 aa8.7□□□□□ -1.02
CSDE1-218ENST00000610726 LGR6Q9HBX8 967 aa8.7□□□□□ -1.02
CSDE1-218ENST00000610726 LRP2BPQ9P2M1 347 aa8.7□□□□□ -1.02
CSDE1-218ENST00000610726 SBNO2Q9Y2G9 1366 aa8.7□□□□□ -1.02
CSDE1-218ENST00000610726 GOLGA6L19H0YKK7 550 aa8.7□□□□□ -1.02
CSDE1-218ENST00000610726 IFIT1P09914 478 aaKnown RBP8.7□□□□□ -1.02
CSDE1-218ENST00000610726 SART3Q15020 963 aaKnown RBP8.7□□□□□ -1.02
CSDE1-218ENST00000610726 ZNF652Q9Y2D9 606 aa8.7□□□□□ -1.02
CSDE1-218ENST00000610726 CDC42BPAQ5VT25 1732 aa8.7□□□□□ -1.02
CSDE1-218ENST00000610726 MAP3K5Q99683 1374 aa8.7□□□□□ -1.02
CSDE1-218ENST00000610726 CWF19L2Q2TBE0 894 aaKnown RBP8.7□□□□□ -1.02
CSDE1-218ENST00000610726 TBC1D9Q6ZT07 1266 aa8.7□□□□□ -1.02
CSDE1-218ENST00000610726 C16orf71Q8IYS4 520 aaPredicted RBP8.7□□□□□ -1.02
CSDE1-218ENST00000610726 CWC25Q9NXE8 425 aaPredicted RBP8.7□□□□□ -1.02
CSDE1-218ENST00000610726 RAI14Q9P0K7 980 aa8.7□□□□□ -1.02
CSDE1-218ENST00000610726 PES1O00541 588 aaKnown RBP8.69□□□□□ -1.02
CSDE1-218ENST00000610726 CEBPZQ03701 1054 aaKnown RBP8.69□□□□□ -1.02
CSDE1-218ENST00000610726 PRPF40BQ6NWY9 871 aaKnown RBP8.69□□□□□ -1.02
CSDE1-218ENST00000610726 ANKRD44Q8N8A2 993 aa8.69□□□□□ -1.02
CSDE1-218ENST00000610726 SNRKQ9NRH2 765 aa8.69□□□□□ -1.02
CSDE1-218ENST00000610726 BTG4Q9NY30 223 aa8.69□□□□□ -1.02
CSDE1-218ENST00000610726 SBNO1A3KN83 1393 aa8.69□□□□□ -1.02
CSDE1-218ENST00000610726 BMP2KLQ5H9B9 411 aa8.69□□□□□ -1.02
CSDE1-218ENST00000610726 CAVIN1Q6NZI2 390 aaKnown RBP8.69□□□□□ -1.02
CSDE1-218ENST00000610726 KSR2Q6VAB6 950 aa8.69□□□□□ -1.02
CSDE1-218ENST00000610726 LDHAL6AQ6ZMR3 332 aa8.69□□□□□ -1.02
CSDE1-218ENST00000610726 RHPN1Q8TCX5 695 aa8.69□□□□□ -1.02
CSDE1-218ENST00000610726 ECHDC1Q9NTX5 307 aa8.69□□□□□ -1.02
CSDE1-218ENST00000610726 RNMTO43148 476 aaKnown RBP8.69□□□□□ -1.02
CSDE1-218ENST00000610726 CASTP20810 708 aaKnown RBP8.69□□□□□ -1.02
CSDE1-218ENST00000610726 NUCB1Q02818 461 aa8.69□□□□□ -1.02
CSDE1-218ENST00000610726 SF3B2Q13435 895 aaKnown RBP8.69□□□□□ -1.02
CSDE1-218ENST00000610726 DDB1Q16531 1140 aa8.69□□□□□ -1.02
CSDE1-218ENST00000610726 RNF214Q8ND24 703 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms