RNA–Protein interactions for RNA: ENST00000607814.5

CTSA-218, Transcript of cathepsin A, humanhuman

TSL 4

Gene CTSA, Length 584 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-218ENST00000607814 KIF13BQ9NQT8 1826 aa18.65■□□□□ 0.58
CTSA-218ENST00000607814 DNAJC5GQ8N7S2 189 aa18.65■□□□□ 0.58
CTSA-218ENST00000607814 LINC00116Q8NCU8 138 aa18.65■□□□□ 0.58
CTSA-218ENST00000607814 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.65■□□□□ 0.58
CTSA-218ENST00000607814 WWC3Q9ULE0 1092 aa18.65■□□□□ 0.58
CTSA-218ENST00000607814 SPG7Q9UQ90 795 aa18.65■□□□□ 0.58
CTSA-218ENST00000607814 PXDNLA1KZ92 1463 aa18.64■□□□□ 0.57
CTSA-218ENST00000607814 GNPATO15228 680 aa18.63■□□□□ 0.57
CTSA-218ENST00000607814 MMP10P09238 476 aa18.63■□□□□ 0.57
CTSA-218ENST00000607814 TMOD3Q9NYL9 352 aa18.63■□□□□ 0.57
CTSA-218ENST00000607814 POLKQ9UBT6 870 aa18.63■□□□□ 0.57
CTSA-218ENST00000607814 SMIM5Q71RC9 77 aa18.62■□□□□ 0.57
CTSA-218ENST00000607814 NLGN1Q8N2Q7 840 aa18.62■□□□□ 0.57
CTSA-218ENST00000607814 KNSTRNQ9Y448 316 aa18.62■□□□□ 0.57
CTSA-218ENST00000607814 WASHC2AQ641Q2 1341 aa18.62■□□□□ 0.57
CTSA-218ENST00000607814 ATP6V1AP38606 617 aa18.61■□□□□ 0.57
CTSA-218ENST00000607814 MORC1Q86VD1 984 aa18.61■□□□□ 0.57
CTSA-218ENST00000607814 PLEKHG2Q9H7P9 1386 aa18.6■□□□□ 0.57
CTSA-218ENST00000607814 ITPK1Q13572 414 aa18.6■□□□□ 0.57
CTSA-218ENST00000607814 KIAA1551Q9HCM1 1747 aa18.6■□□□□ 0.57
CTSA-218ENST00000607814 C10orf71Q711Q0 1435 aa18.59■□□□□ 0.57
CTSA-218ENST00000607814 PCNTO95613 3336 aa18.59■□□□□ 0.57
CTSA-218ENST00000607814 ADRA2BP18089 450 aa18.59■□□□□ 0.57
CTSA-218ENST00000607814 RBM46Q8TBY0 533 aaKnown RBP18.59■□□□□ 0.57
CTSA-218ENST00000607814 ASAP1Q9ULH1 1129 aa18.59■□□□□ 0.57
CTSA-218ENST00000607814 BCS1LQ9Y276 419 aa18.59■□□□□ 0.57
CTSA-218ENST00000607814 CC2D1BQ5T0F9 858 aaKnown RBP18.58■□□□□ 0.56
CTSA-218ENST00000607814 TRAPPC3LQ5T215 181 aa18.58■□□□□ 0.56
CTSA-218ENST00000607814 IFNL2Q8IZJ0 200 aa18.58■□□□□ 0.56
CTSA-218ENST00000607814 RTCBQ9Y3I0 505 aaKnown RBP18.58■□□□□ 0.56
CTSA-218ENST00000607814 ZNF831Q5JPB2 1677 aa18.57■□□□□ 0.56
CTSA-218ENST00000607814 AMER1Q5JTC6 1135 aaPredicted RBP18.57■□□□□ 0.56
CTSA-218ENST00000607814 ARHGAP27Q6ZUM4 889 aa18.57■□□□□ 0.56
CTSA-218ENST00000607814 CCDC87Q9NVE4 849 aa18.57■□□□□ 0.56
CTSA-218ENST00000607814 N4BP2Q86UW6 1770 aaPredicted RBP18.56■□□□□ 0.56
CTSA-218ENST00000607814 A0A0G2JLW4 131 aa18.56■□□□□ 0.56
CTSA-218ENST00000607814 PER1O15534 1290 aaPredicted RBP18.56■□□□□ 0.56
CTSA-218ENST00000607814 PHKG2P15735 406 aa18.56■□□□□ 0.56
CTSA-218ENST00000607814 RC3H1Q5TC82 1133 aaKnown RBP18.56■□□□□ 0.56
CTSA-218ENST00000607814 ATG3Q9NT62 314 aa18.56■□□□□ 0.56
CTSA-218ENST00000607814 WDR90Q96KV7 1748 aa18.55■□□□□ 0.56
CTSA-218ENST00000607814 ANKRD26Q9UPS8 1709 aa18.55■□□□□ 0.56
CTSA-218ENST00000607814 FSTL1Q12841 308 aa18.55■□□□□ 0.56
CTSA-218ENST00000607814 EIF4A2Q14240 407 aaKnown RBP18.55■□□□□ 0.56
CTSA-218ENST00000607814 EYA1Q99502 592 aa18.55■□□□□ 0.56
CTSA-218ENST00000607814 NMRK2Q9NPI5 230 aa18.55■□□□□ 0.56
CTSA-218ENST00000607814 KDRP35968 1356 aa18.55■□□□□ 0.56
CTSA-218ENST00000607814 FCHSD2O94868 740 aa18.54■□□□□ 0.56
CTSA-218ENST00000607814 C16orf71Q8IYS4 520 aaPredicted RBP18.54■□□□□ 0.56
CTSA-218ENST00000607814 JMYQ8N9B5 988 aa18.54■□□□□ 0.56
CTSA-218ENST00000607814 KLRG1Q96E93 195 aa18.54■□□□□ 0.56
CTSA-218ENST00000607814 BRCA1P38398 1863 aaKnown RBP18.54■□□□□ 0.56
CTSA-218ENST00000607814 C4AP0C0L4 1744 aa18.53■□□□□ 0.56
CTSA-218ENST00000607814 DPEP1P16444 411 aa18.53■□□□□ 0.56
CTSA-218ENST00000607814 CNTNAP4Q9C0A0 1308 aa18.52■□□□□ 0.56
CTSA-218ENST00000607814 ARFGEF1Q9Y6D6 1849 aa18.52■□□□□ 0.56
CTSA-218ENST00000607814 ERVV-2B6SEH9 535 aa18.52■□□□□ 0.56
CTSA-218ENST00000607814 ARHGEF1Q92888 912 aaKnown RBP18.52■□□□□ 0.56
CTSA-218ENST00000607814 PARP3Q9Y6F1 533 aa18.52■□□□□ 0.56
CTSA-218ENST00000607814 KDM2BQ8NHM5 1336 aa18.51■□□□□ 0.55
CTSA-218ENST00000607814 GYS1P13807 737 aa18.51■□□□□ 0.55
CTSA-218ENST00000607814 RFC4P35249 363 aa18.51■□□□□ 0.55
CTSA-218ENST00000607814 C9orf131Q5VYM1 1079 aa18.51■□□□□ 0.55
CTSA-218ENST00000607814 RPS6KA4O75676 772 aa18.5■□□□□ 0.55
CTSA-218ENST00000607814 HSP90AB1P08238 724 aaKnown RBP18.5■□□□□ 0.55
CTSA-218ENST00000607814 PIM2Q9P1W9 311 aa18.5■□□□□ 0.55
CTSA-218ENST00000607814 KCNA3P22001 575 aa18.49■□□□□ 0.55
CTSA-218ENST00000607814 SLC4A9Q96Q91 983 aa18.49■□□□□ 0.55
CTSA-218ENST00000607814 COL5A3P25940 1745 aaPredicted RBP18.49■□□□□ 0.55
CTSA-218ENST00000607814 DCAF5Q96JK2 942 aa18.48■□□□□ 0.55
CTSA-218ENST00000607814 MTHFSP49914 203 aa18.47■□□□□ 0.55
CTSA-218ENST00000607814 DALRD3Q5D0E6 543 aaKnown RBP18.47■□□□□ 0.55
CTSA-218ENST00000607814 COL13A1Q5TAT6 717 aaPredicted RBP18.47■□□□□ 0.55
CTSA-218ENST00000607814 RBM42Q9BTD8 480 aaKnown RBP18.47■□□□□ 0.55
CTSA-218ENST00000607814 AEBP1Q8IUX7 1158 aa18.46■□□□□ 0.55
CTSA-218ENST00000607814 ZC3H4Q9UPT8 1303 aaKnown RBP18.46■□□□□ 0.55
CTSA-218ENST00000607814 TNRC6CQ9HCJ0 1690 aaKnown RBP18.44■□□□□ 0.54
CTSA-218ENST00000607814 KCPQ6ZWJ8 1503 aa18.44■□□□□ 0.54
CTSA-218ENST00000607814 SMC1BQ8NDV3 1235 aa18.44■□□□□ 0.54
CTSA-218ENST00000607814 RNF181Q9P0P0 153 aa18.44■□□□□ 0.54
CTSA-218ENST00000607814 MYH14Q7Z406 1995 aaKnown RBP18.43■□□□□ 0.54
CTSA-218ENST00000607814 HTRA3P83110 453 aa18.43■□□□□ 0.54
CTSA-218ENST00000607814 IL13P35225 146 aa18.42■□□□□ 0.54
CTSA-218ENST00000607814 PLEKHO1Q53GL0 409 aaPredicted RBP18.42■□□□□ 0.54
CTSA-218ENST00000607814 USP42Q9H9J4 1324 aaKnown RBP18.42■□□□□ 0.54
CTSA-218ENST00000607814 CABP4P57796 275 aa18.41■□□□□ 0.54
CTSA-218ENST00000607814 AMOTQ4VCS5 1084 aa18.41■□□□□ 0.54
CTSA-218ENST00000607814 SULT6B1Q6IMI4 303 aa18.41■□□□□ 0.54
CTSA-218ENST00000607814 TNS4Q8IZW8 715 aa18.41■□□□□ 0.54
CTSA-218ENST00000607814 RRAGCQ9HB90 399 aa18.41■□□□□ 0.54
CTSA-218ENST00000607814 SBF1O95248 1867 aa18.4■□□□□ 0.54
CTSA-218ENST00000607814 CRKLP46109 303 aaKnown RBP18.4■□□□□ 0.54
CTSA-218ENST00000607814 PRELPP51888 382 aa18.4■□□□□ 0.54
CTSA-218ENST00000607814 DDR1Q08345 913 aa18.39■□□□□ 0.53
CTSA-218ENST00000607814 FKBP8Q14318 412 aa18.39■□□□□ 0.53
CTSA-218ENST00000607814 KDM6AO15550 1401 aaPredicted RBP18.39■□□□□ 0.53
CTSA-218ENST00000607814 HMOX1P09601 288 aa18.38■□□□□ 0.53
CTSA-218ENST00000607814 ZNF530Q6P9A1 599 aaPredicted RBP18.37■□□□□ 0.53
CTSA-218ENST00000607814 POLRMTO00411 1230 aaKnown RBP18.36■□□□□ 0.53
CTSA-218ENST00000607814 PTCD1O75127 700 aaKnown RBP18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 115.7 ms