RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 IPO9Q96P70 1041 aaKnown RBP14.95□□□□□ -0.02
VRK3-223ENST00000601341 CRBNQ96SW2 442 aa14.95□□□□□ -0.02
VRK3-223ENST00000601341 KDM2BQ8NHM5 1336 aa14.94□□□□□ -0.02
VRK3-223ENST00000601341 BCAR3O75815 825 aa14.94□□□□□ -0.02
VRK3-223ENST00000601341 TWISTNBQ3B726 338 aaPredicted RBP14.94□□□□□ -0.02
VRK3-223ENST00000601341 C8orf58Q8NAV2 365 aa14.94□□□□□ -0.02
VRK3-223ENST00000601341 USP21Q9UK80 565 aa14.94□□□□□ -0.02
VRK3-223ENST00000601341 NOP58Q9Y2X3 529 aaKnown RBP14.94□□□□□ -0.02
VRK3-223ENST00000601341 EXOC5O00471 708 aa14.93□□□□□ -0.02
VRK3-223ENST00000601341 VAMP4O75379 141 aa14.93□□□□□ -0.02
VRK3-223ENST00000601341 AAMPQ13685 434 aa14.93□□□□□ -0.02
VRK3-223ENST00000601341 NKX1-1Q15270 411 aaPredicted RBP14.93□□□□□ -0.02
VRK3-223ENST00000601341 BARGINQ6ZT62 677 aa14.93□□□□□ -0.02
VRK3-223ENST00000601341 KDM6AO15550 1401 aaPredicted RBP14.93□□□□□ -0.02
VRK3-223ENST00000601341 BTBD11A6QL63 1104 aa14.93□□□□□ -0.02
VRK3-223ENST00000601341 ELL2O00472 640 aaPredicted RBP14.93□□□□□ -0.02
VRK3-223ENST00000601341 ALDH1L2Q3SY69 923 aa14.93□□□□□ -0.02
VRK3-223ENST00000601341 TSPYL6Q8N831 410 aa14.93□□□□□ -0.02
VRK3-223ENST00000601341 SLC52A2Q9HAB3 445 aa14.93□□□□□ -0.02
VRK3-223ENST00000601341 PLIN1O60240 522 aa14.92□□□□□ -0.02
VRK3-223ENST00000601341 BACH2Q9BYV9 841 aa14.92□□□□□ -0.02
VRK3-223ENST00000601341 ADAMTS7Q9UKP4 1686 aa14.92□□□□□ -0.02
VRK3-223ENST00000601341 PDE3AQ14432 1141 aa14.91□□□□□ -0.02
VRK3-223ENST00000601341 SMC4Q9NTJ3 1288 aa14.91□□□□□ -0.02
VRK3-223ENST00000601341 SOS1Q07889 1333 aaPredicted RBP14.91□□□□□ -0.02
VRK3-223ENST00000601341 ERVV-2B6SEH9 535 aa14.9□□□□□ -0.02
VRK3-223ENST00000601341 NFATC2IPQ8NCF5 419 aa14.9□□□□□ -0.02
VRK3-223ENST00000601341 SSH1Q8WYL5 1049 aa14.9□□□□□ -0.02
VRK3-223ENST00000601341 PDE4AP27815 886 aa14.9□□□□□ -0.02
VRK3-223ENST00000601341 CABP4P57796 275 aa14.9□□□□□ -0.02
VRK3-223ENST00000601341 DDB1Q16531 1140 aa14.9□□□□□ -0.02
VRK3-223ENST00000601341 KRT24Q2M2I5 525 aa14.9□□□□□ -0.02
VRK3-223ENST00000601341 BCL2L13Q9BXK5 485 aa14.9□□□□□ -0.02
VRK3-223ENST00000601341 AFF2P51816 1311 aa14.9□□□□□ -0.02
VRK3-223ENST00000601341 CANXP27824 592 aaKnown RBP14.89□□□□□ -0.03
VRK3-223ENST00000601341 TNS2Q63HR2 1409 aa14.88□□□□□ -0.03
VRK3-223ENST00000601341 BRPF1P55201 1214 aaPredicted RBP14.88□□□□□ -0.03
VRK3-223ENST00000601341 EIF4A1P60842 406 aaKnown RBP14.88□□□□□ -0.03
VRK3-223ENST00000601341 MRC1P22897 1456 aa14.88□□□□□ -0.03
VRK3-223ENST00000601341 FAM98CQ17RN3 349 aaKnown RBP14.88□□□□□ -0.03
VRK3-223ENST00000601341 FRAT1Q92837 279 aaPredicted RBP14.88□□□□□ -0.03
VRK3-223ENST00000601341 CHMP4AQ9BY43 222 aa14.88□□□□□ -0.03
VRK3-223ENST00000601341 SCN11AQ9UI33 1791 aa14.87□□□□□ -0.03
VRK3-223ENST00000601341 C20orf194Q5TEA3 1177 aa14.87□□□□□ -0.03
VRK3-223ENST00000601341 ZNF790Q6PG37 636 aa14.87□□□□□ -0.03
VRK3-223ENST00000601341 TRPC5Q9UL62 973 aaPredicted RBP14.87□□□□□ -0.03
VRK3-223ENST00000601341 KIF16BQ96L93 1317 aa14.87□□□□□ -0.03
VRK3-223ENST00000601341 IPO8O15397 1037 aaKnown RBP14.86□□□□□ -0.03
VRK3-223ENST00000601341 KCNQ3O43525 872 aa14.86□□□□□ -0.03
VRK3-223ENST00000601341 HOXB7P09629 217 aa14.86□□□□□ -0.03
VRK3-223ENST00000601341 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.86□□□□□ -0.03
VRK3-223ENST00000601341 SHANK3Q9BYB0 1731 aa14.86□□□□□ -0.03
VRK3-223ENST00000601341 TTC5Q8N0Z6 440 aa14.85□□□□□ -0.03
VRK3-223ENST00000601341 GJD4Q96KN9 370 aaPredicted RBP14.85□□□□□ -0.03
VRK3-223ENST00000601341 ZBTB47Q9UFB7 747 aaPredicted RBP14.85□□□□□ -0.03
VRK3-223ENST00000601341 CCDC30Q5VVM6 783 aa14.85□□□□□ -0.03
VRK3-223ENST00000601341 ZKSCAN2Q63HK3 967 aa14.85□□□□□ -0.03
VRK3-223ENST00000601341 MRPL50Q8N5N7 158 aaKnown RBP14.85□□□□□ -0.03
VRK3-223ENST00000601341 WNK3Q9BYP7 1800 aa14.84□□□□□ -0.03
VRK3-223ENST00000601341 SIPA1L3O60292 1781 aaPredicted RBP14.83□□□□□ -0.03
VRK3-223ENST00000601341 KDM3BQ7LBC6 1761 aa14.83□□□□□ -0.03
VRK3-223ENST00000601341 ATRNO75882 1429 aa14.83□□□□□ -0.03
VRK3-223ENST00000601341 SLC39A6Q13433 755 aa14.83□□□□□ -0.03
VRK3-223ENST00000601341 STK31Q9BXU1 1019 aa14.83□□□□□ -0.03
VRK3-223ENST00000601341 TMOD3Q9NYL9 352 aa14.83□□□□□ -0.03
VRK3-223ENST00000601341 NOB1Q9ULX3 412 aaKnown RBP14.83□□□□□ -0.03
VRK3-223ENST00000601341 HEG1Q9ULI3 1381 aa14.83□□□□□ -0.04
VRK3-223ENST00000601341 A0A0G2JS52 829 aa14.83□□□□□ -0.04
VRK3-223ENST00000601341 ATF7IPQ6VMQ6 1270 aa14.83□□□□□ -0.04
VRK3-223ENST00000601341 ARHGAP45Q92619 1136 aa14.83□□□□□ -0.04
VRK3-223ENST00000601341 QTRT2Q9H974 415 aaKnown RBP14.83□□□□□ -0.04
VRK3-223ENST00000601341 VIRMAQ69YN4 1812 aaKnown RBP14.82□□□□□ -0.04
VRK3-223ENST00000601341 GIGYF1O75420 1035 aaPredicted RBP14.82□□□□□ -0.04
VRK3-223ENST00000601341 MARCH10Q8NA82 808 aaPredicted RBP14.82□□□□□ -0.04
VRK3-223ENST00000601341 SLC4A2P04920 1241 aa14.81□□□□□ -0.04
VRK3-223ENST00000601341 HDGFL1Q5TGJ6 251 aa14.81□□□□□ -0.04
VRK3-223ENST00000601341 DDRGK1Q96HY6 314 aa14.81□□□□□ -0.04
VRK3-223ENST00000601341 FMNL2Q96PY5 1086 aa14.81□□□□□ -0.04
VRK3-223ENST00000601341 ONECUT3O60422 494 aaPredicted RBP14.8□□□□□ -0.04
VRK3-223ENST00000601341 TRIM27P14373 513 aa14.8□□□□□ -0.04
VRK3-223ENST00000601341 FTSJ3Q8IY81 847 aaKnown RBP14.8□□□□□ -0.04
VRK3-223ENST00000601341 DZIP1LQ8IYY4 767 aaKnown RBP14.8□□□□□ -0.04
VRK3-223ENST00000601341 ZNF496Q96IT1 587 aaPredicted RBP14.8□□□□□ -0.04
VRK3-223ENST00000601341 EIF2S2P20042 333 aaKnown RBP14.8□□□□□ -0.04
VRK3-223ENST00000601341 PANK1Q8TE04 598 aa14.8□□□□□ -0.04
VRK3-223ENST00000601341 PIGBQ92521 554 aa14.8□□□□□ -0.04
VRK3-223ENST00000601341 SNRPA1P09661 255 aaKnown RBP14.79□□□□□ -0.04
VRK3-223ENST00000601341 ZNF772Q68DY9 489 aaPredicted RBP14.79□□□□□ -0.04
VRK3-223ENST00000601341 NECTIN2Q92692 538 aa14.79□□□□□ -0.04
VRK3-223ENST00000601341 CLUAP1Q96AJ1 413 aa14.79□□□□□ -0.04
VRK3-223ENST00000601341 PTPRCP08575 1304 aa14.78□□□□□ -0.04
VRK3-223ENST00000601341 PRIM1P49642 420 aaKnown RBP14.78□□□□□ -0.04
VRK3-223ENST00000601341 SYTL4Q96C24 671 aaPredicted RBP14.78□□□□□ -0.04
VRK3-223ENST00000601341 API5Q9BZZ5 524 aaKnown RBP14.78□□□□□ -0.04
VRK3-223ENST00000601341 GLI3P10071 1580 aa14.78□□□□□ -0.04
VRK3-223ENST00000601341 BCL9O00512 1426 aa14.78□□□□□ -0.04
VRK3-223ENST00000601341 FAM161AQ3B820 660 aa14.78□□□□□ -0.04
VRK3-223ENST00000601341 RLBP1P12271 317 aa14.77□□□□□ -0.05
VRK3-223ENST00000601341 DBF4Q9UBU7 674 aaPredicted RBP14.77□□□□□ -0.05
VRK3-223ENST00000601341 TNNQ9UQP3 1299 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms