RNA–Protein interactions for RNA: ENST00000601324.1

VRK3-222, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-222ENST00000601324 RASA1P20936 1047 aa7.82□□□□□ -1.16
VRK3-222ENST00000601324 GTF2IP78347 998 aa7.82□□□□□ -1.16
VRK3-222ENST00000601324 LARP1Q6PKG0 1096 aaKnown RBP7.82□□□□□ -1.16
VRK3-222ENST00000601324 ILDR2Q71H61 639 aa7.82□□□□□ -1.16
VRK3-222ENST00000601324 ESF1Q9H501 851 aaKnown RBP7.82□□□□□ -1.16
VRK3-222ENST00000601324 LMTK3Q96Q04 1460 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 ASXL2Q76L83 1435 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 USP17L15C9J2P7 530 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 USP17L10C9JJH3 530 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 USP17L13C9JLJ4 530 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 USP17L12C9JPN9 530 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 USP17L11C9JVI0 530 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 USP17L21D6R901 530 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 USP17L18D6R9N7 530 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 USP17L22D6RA61 530 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 USP17L17D6RBQ6 530 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 USP17L19D6RCP7 530 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 USP17L20D6RJB6 530 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 CLDN10P78369 228 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 USP17L24Q0WX57 530 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 OGFOD1Q8N543 542 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 KLF16Q9BXK1 252 aaPredicted RBP7.81□□□□□ -1.16
VRK3-222ENST00000601324 DNAAF2Q9NVR5 837 aaKnown RBP7.81□□□□□ -1.16
VRK3-222ENST00000601324 PCDHGA11Q9Y5H2 935 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 ABCC2Q92887 1545 aa7.81□□□□□ -1.16
VRK3-222ENST00000601324 ZIC2O95409 532 aaPredicted RBP7.8□□□□□ -1.16
VRK3-222ENST00000601324 TIMP2P16035 220 aa7.8□□□□□ -1.16
VRK3-222ENST00000601324 WDR4P57081 412 aaKnown RBP7.8□□□□□ -1.16
VRK3-222ENST00000601324 PTK7Q13308 1070 aa7.8□□□□□ -1.16
VRK3-222ENST00000601324 ELOAQ14241 798 aaKnown RBP7.8□□□□□ -1.16
VRK3-222ENST00000601324 CRTC2Q53ET0 693 aaPredicted RBP7.8□□□□□ -1.16
VRK3-222ENST00000601324 LARGE2Q8N3Y3 721 aa7.8□□□□□ -1.16
VRK3-222ENST00000601324 ITPKCQ96DU7 683 aa7.8□□□□□ -1.16
VRK3-222ENST00000601324 OSBPL3Q9H4L5 887 aa7.8□□□□□ -1.16
VRK3-222ENST00000601324 PLB1Q6P1J6 1458 aa7.8□□□□□ -1.16
VRK3-222ENST00000601324 KIAA0586Q9BVV6 1533 aa7.79□□□□□ -1.16
VRK3-222ENST00000601324 CYP2U1Q7Z449 544 aa7.79□□□□□ -1.16
VRK3-222ENST00000601324 HPS1Q92902 700 aa7.79□□□□□ -1.16
VRK3-222ENST00000601324 MAP3K4Q9Y6R4 1608 aa7.78□□□□□ -1.16
VRK3-222ENST00000601324 BIVM-ERCC5R4GMW8 1640 aa7.78□□□□□ -1.16
VRK3-222ENST00000601324 FAM187AA6NFU0 413 aa7.78□□□□□ -1.16
VRK3-222ENST00000601324 ZBTB7BO15156 539 aaPredicted RBP7.78□□□□□ -1.16
VRK3-222ENST00000601324 ADD1P35611 737 aaKnown RBP7.78□□□□□ -1.16
VRK3-222ENST00000601324 PSME1Q06323 249 aa7.78□□□□□ -1.16
VRK3-222ENST00000601324 SIX5Q8N196 739 aa7.78□□□□□ -1.16
VRK3-222ENST00000601324 RETREG2Q8NC44 543 aa7.78□□□□□ -1.16
VRK3-222ENST00000601324 ZNF594Q96JF6 807 aaPredicted RBP7.78□□□□□ -1.16
VRK3-222ENST00000601324 ZFAND3Q9H8U3 227 aa7.78□□□□□ -1.16
VRK3-222ENST00000601324 NOVA2Q9UNW9 492 aaKnown RBP7.78□□□□□ -1.16
VRK3-222ENST00000601324 KIAA1024Q9UPX6 916 aa7.78□□□□□ -1.16
VRK3-222ENST00000601324 UHRF1BP1LA0JNW5 1464 aa7.78□□□□□ -1.16
VRK3-222ENST00000601324 TOP2BQ02880 1626 aa7.78□□□□□ -1.16
VRK3-222ENST00000601324 EPRSP07814 1512 aaKnown RBP7.78□□□□□ -1.16
VRK3-222ENST00000601324 NRG2O14511 850 aaPredicted RBP7.77□□□□□ -1.17
VRK3-222ENST00000601324 ADH1AP07327 375 aa7.77□□□□□ -1.17
VRK3-222ENST00000601324 CSB-PGBD3P0DP91 1061 aa7.77□□□□□ -1.17
VRK3-222ENST00000601324 Q6ZVU0 165 aa7.77□□□□□ -1.17
VRK3-222ENST00000601324 ANKMY2Q8IV38 441 aa7.77□□□□□ -1.17
VRK3-222ENST00000601324 ZMIZ1Q9ULJ6 1067 aa7.77□□□□□ -1.17
VRK3-222ENST00000601324 PTPRGP23470 1445 aa7.77□□□□□ -1.17
VRK3-222ENST00000601324 GFRA3O60609 400 aa7.76□□□□□ -1.17
VRK3-222ENST00000601324 DKK1O94907 266 aa7.76□□□□□ -1.17
VRK3-222ENST00000601324 GNRH1P01148 92 aa7.76□□□□□ -1.17
VRK3-222ENST00000601324 CBLBQ13191 982 aa7.76□□□□□ -1.17
VRK3-222ENST00000601324 CCDC102BQ68D86 513 aa7.76□□□□□ -1.17
VRK3-222ENST00000601324 TPCN2Q8NHX9 752 aa7.76□□□□□ -1.17
VRK3-222ENST00000601324 USTQ9Y2C2 406 aa7.76□□□□□ -1.17
VRK3-222ENST00000601324 RBM19Q9Y4C8 960 aaKnown RBP7.76□□□□□ -1.17
VRK3-222ENST00000601324 KDM5BQ9UGL1 1544 aa7.75□□□□□ -1.17
VRK3-222ENST00000601324 AVPP01185 164 aa7.75□□□□□ -1.17
VRK3-222ENST00000601324 PDE4CQ08493 712 aa7.75□□□□□ -1.17
VRK3-222ENST00000601324 DPYDQ12882 1025 aa7.75□□□□□ -1.17
VRK3-222ENST00000601324 LAPTM4AQ15012 233 aa7.75□□□□□ -1.17
VRK3-222ENST00000601324 FAM200AQ8TCP9 573 aa7.75□□□□□ -1.17
VRK3-222ENST00000601324 WASLO00401 505 aaPredicted RBP7.74□□□□□ -1.17
VRK3-222ENST00000601324 CAPN5O15484 640 aaPredicted RBP7.74□□□□□ -1.17
VRK3-222ENST00000601324 DGAT1O75907 488 aa7.74□□□□□ -1.17
VRK3-222ENST00000601324 GDF10P55107 478 aa7.74□□□□□ -1.17
VRK3-222ENST00000601324 PKDCCQ504Y2 493 aa7.74□□□□□ -1.17
VRK3-222ENST00000601324 TMEM164Q5U3C3 297 aa7.74□□□□□ -1.17
VRK3-222ENST00000601324 MEIOBQ8N635 442 aa7.74□□□□□ -1.17
VRK3-222ENST00000601324 STK32AQ8WU08 396 aa7.74□□□□□ -1.17
VRK3-222ENST00000601324 TMEM229AB2RXF0 380 aa7.73□□□□□ -1.17
VRK3-222ENST00000601324 SCNN1DP51172 638 aa7.73□□□□□ -1.17
VRK3-222ENST00000601324 SEC13P55735 322 aa7.73□□□□□ -1.17
VRK3-222ENST00000601324 ESCO1Q5FWF5 840 aa7.73□□□□□ -1.17
VRK3-222ENST00000601324 KDF1Q8NAX2 398 aaPredicted RBP7.73□□□□□ -1.17
VRK3-222ENST00000601324 TEX14Q8IWB6 1497 aa7.73□□□□□ -1.17
VRK3-222ENST00000601324 IGF1RP08069 1367 aa7.72□□□□□ -1.17
VRK3-222ENST00000601324 TNIKQ9UKE5 1360 aa7.72□□□□□ -1.17
VRK3-222ENST00000601324 TMEM88BA6NKF7 163 aa7.72□□□□□ -1.17
VRK3-222ENST00000601324 M0R2N6 131 aa7.72□□□□□ -1.17
VRK3-222ENST00000601324 PTGIRP43119 386 aa7.72□□□□□ -1.17
VRK3-222ENST00000601324 AGBL1Q96MI9 1066 aa7.72□□□□□ -1.17
VRK3-222ENST00000601324 ETNK1Q9HBU6 452 aa7.72□□□□□ -1.17
VRK3-222ENST00000601324 ARHGEF10LQ9HCE6 1279 aa7.72□□□□□ -1.17
VRK3-222ENST00000601324 ZNF358Q9NW07 568 aa7.72□□□□□ -1.17
VRK3-222ENST00000601324 PTPRMP28827 1452 aa7.72□□□□□ -1.17
VRK3-222ENST00000601324 UACAQ9BZF9 1416 aa7.71□□□□□ -1.17
VRK3-222ENST00000601324 ADAMTSL3P82987 1691 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms